SMTL ID : 4i9x.1

Crystal structure of human cytomegalovirus glycoprotein UL141 targeting the death receptor TRAIL-R2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: M.11, W.43, N.116, H.119 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain B: M.11, W.43, N.116, H.119 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: Q.31, Y.82, N.101 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.82 Hydrogen bonds: A:Q.31, A:N.101 Water bridges: A:N.101

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 7 residues within 4Å: Chain A: H.91 Chain B: V.26, A.27, E.30, P.159, T.160, I.182 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.91 CA.5: 5 residues within 4Å: Chain B: R.49, A.50, R.51, M.109, E.111 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:M.109, B:E.111 CA.7: 9 residues within 4Å: Chain D: K.41, Y.42, G.43, Q.44, D.45, C.59, C.72, T.73, T.74 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.45 CA.8: 8 residues within 4Å: Chain A: D.6, I.7, A.8 Chain D: Y.46, R.58, C.59, T.60, N.77 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: D:Y.46, D:R.58, A:D.6, H2O.2

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 1 residues within 4Å: Chain B: W.85 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.85 Water bridges: B:W.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemcovicova, I. et al., Structure of Human Cytomegalovirus UL141 Binding to TRAIL-R2 Reveals Novel, Non-canonical Death Receptor Interactions. Plos Pathog. (2013)

Release Date

2013-04-03

Peptides

Protein UL141: AB
Tumor necrosis factor receptor superfamily member 10B: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Protein UL141

Tumor necrosis factor receptor superfamily member 10B