SMTL ID : 4ic3.1

Crystal structure of the F495L mutant XIAP RING domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.27, C.30, R.33, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.27, A:C.30, A:C.48, A:C.51 ZN.2: 4 residues within 4Å: Chain A: C.42, H.44, C.58, C.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:H.44, A:C.58, A:C.61 ZN.4: 4 residues within 4Å: Chain B: C.27, C.30, C.48, C.51 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.27, B:C.30, B:C.48, B:C.51 ZN.5: 4 residues within 4Å: Chain B: C.42, H.44, C.58, C.61 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:H.44, B:C.58, B:C.61

2 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: C.30, D.32 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.32, A:D.32, H2O.1, H2O.1, H2O.2 NI.6: 1 residues within 4Å: Chain B: D.32 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.32, H2O.3, H2O.4, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakatani, Y. et al., Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase. Biochem.J. (2013)

Release Date

2012-12-19

Peptides

E3 ubiquitin-protein ligase XIAP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase XIAP