SMTL ID : 4ich.1

Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 9 residues within 4Å: Chain A: L.278, Q.281, V.282, K.286, C.289, S.290, H.293, M.294 Chain B: T.269 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.290, A:S.290 BME.5: 8 residues within 4Å: Chain B: L.278, Q.281, V.282, K.286, C.289, S.290, H.293, M.294 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.290

2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.2: 4 residues within 4Å: Chain A: Q.204, W.215, W.218, D.276 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.276 Water bridges: A:L.211, A:W.215, A:A.238, A:W.242, A:D.276 B3P.6: 5 residues within 4Å: Chain B: Q.204, W.215, W.218, I.275, D.276 5 PLIP interactions: 5 interactions with chain B Water bridges: B:L.203, B:Q.204, B:W.215, B:D.276, B:D.276

1 x BR: BROMIDE ION(Non-covalent)

BR.3: 2 residues within 4Å: Chain A: M.248, R.251 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: R.131, L.132, R.135, R.136, E.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.131, A:R.136 EDO.7: 5 residues within 4Å: Chain B: R.131, L.132, R.135, R.136, E.149 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.131, B:R.136, B:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017. To be Published

Release Date

2013-01-02

Peptides

Transcriptional regulator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional regulator