SMTL ID : 4ifz.1

Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein, Mn(II)-AMP product bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 21 residues within 4Å: Chain A: A.96, F.97, N.98, P.99, L.101, V.105, D.159, G.161, A.162, S.240, R.245, H.256, I.257, I.258, D.259, P.260, D.284, T.288, V.292 Ligands: MG.2, MN.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:A.96, A:N.98, A:S.240, A:H.256, A:I.258 Water bridges: A:G.161, A:A.162, A:K.165, A:K.165, A:K.165, A:T.239, A:T.239, A:S.240, A:G.241, A:E.244, A:R.245, A:R.245, A:H.256 Salt bridges: A:H.256

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 8 residues within 4Å: Chain A: A.162, S.240, D.284, A.285, A.287, T.288 Ligands: AMP.1, MN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:A.162, A:D.284, A:D.284, A:T.288, AMP.1

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 6 residues within 4Å: Chain A: A.162, K.165, V.238, D.284 Ligands: AMP.1, MG.2 6 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.284, H2O.1, H2O.1, H2O.1, H2O.1, AMP.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deka, R.K. et al., The TP0796 Lipoprotein of Treponema pallidum Is a Bimetal-dependent FAD Pyrophosphatase with a Potential Role in Flavin Homeostasis. J.Biol.Chem. (2013)

Release Date

2013-02-27

Peptides

Thiamine biosynthesis lipoprotein ApbE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thiamine biosynthesis lipoprotein ApbE

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