SMTL ID : 4ihq.1

Archaellum Assembly ATPase FlaI bound to ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: L.234, F.237, T.239, E.263, A.265, S.266, G.267, K.268, T.269, T.270, R.404 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:T.239, A:T.239, A:E.263, A:A.265, A:S.266, A:G.267, A:K.268, A:T.269, A:T.270, A:T.270, A:R.404 Water bridges: A:K.268, A:T.269, A:T.269, A:E.293, A:Q.392, A:R.404 Salt bridges: A:K.268 ADP.6: 13 residues within 4Å: Chain B: E.140, K.155, L.234, F.237, T.239, A.265, S.266, G.267, K.268, T.269, T.270, R.404 Ligands: MG.7 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:E.140, B:K.155, B:K.155, B:T.239, B:T.239, B:E.263, B:A.265, B:S.266, B:G.267, B:K.268, B:T.269, B:T.270, B:T.270, B:R.404 Water bridges: B:T.229, B:T.229, B:K.268, B:T.269, B:T.271, B:R.404 Salt bridges: B:K.268 ADP.9: 13 residues within 4Å: Chain C: E.140, K.155, L.234, F.237, T.239, A.265, S.266, G.267, K.268, T.269, T.270, R.404 Ligands: MG.10 21 PLIP interactions: 21 interactions with chain C Hydrogen bonds: C:E.140, C:K.155, C:T.239, C:E.263, C:A.265, C:S.266, C:G.267, C:K.268, C:T.269, C:T.270, C:T.270, C:R.404 Water bridges: C:T.229, C:K.268, C:K.268, C:T.269, C:T.269, C:Q.392, C:R.404, C:R.404 Salt bridges: C:K.268 ADP.11: 12 residues within 4Å: Chain D: L.234, F.237, T.239, E.263, A.265, S.266, G.267, K.268, T.269, T.270, R.404 Ligands: MG.12 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:T.239, D:E.263, D:A.265, D:S.266, D:G.267, D:K.268, D:T.269, D:T.270, D:T.270, D:R.404 Water bridges: D:T.229, D:K.268, D:T.269, D:T.269, D:E.293, D:Q.392, D:R.404 Salt bridges: D:K.268 ADP.16: 13 residues within 4Å: Chain E: E.140, K.155, L.234, F.237, T.239, A.265, S.266, G.267, K.268, T.269, T.270, R.404 Ligands: MG.17 19 PLIP interactions: 19 interactions with chain E Hydrogen bonds: E:E.140, E:K.155, E:K.155, E:T.239, E:E.263, E:A.265, E:S.266, E:G.267, E:K.268, E:T.269, E:T.269, E:T.270, E:T.270, E:R.404 Water bridges: E:K.268, E:T.269, E:T.271, E:R.404 Salt bridges: E:K.268 ADP.19: 13 residues within 4Å: Chain F: E.140, K.155, L.234, F.237, T.239, A.265, S.266, G.267, K.268, T.269, T.270, R.404 Ligands: MG.20 20 PLIP interactions: 20 interactions with chain F Hydrogen bonds: F:E.140, F:K.155, F:T.239, F:T.239, F:E.263, F:A.265, F:S.266, F:G.267, F:K.268, F:T.269, F:T.269, F:T.270, F:T.270, F:R.404 Water bridges: F:K.268, F:K.268, F:Q.392, F:R.404, F:R.404 Salt bridges: F:K.268

6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain A: T.269 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.269, H2O.5, H2O.5, H2O.5, H2O.6 MG.7: 1 residues within 4Å: Ligands: ADP.6 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain C: T.269 Ligands: ADP.9 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:T.269, H2O.25, H2O.25, H2O.25, H2O.25 MG.12: 2 residues within 4Å: Chain D: T.269 Ligands: ADP.11 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:T.269, H2O.35, H2O.35, H2O.35, H2O.35 MG.17: 1 residues within 4Å: Ligands: ADP.16 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain F: T.269 Ligands: ADP.19 5 PLIP interactions: 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:T.269, H2O.54, H2O.54, H2O.54, H2O.55

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: T.264, K.268, R.338 Chain B: K.322, R.326 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.358, A:T.358, B:R.326 Water bridges: A:K.268, A:F.359 Salt bridges: A:K.268, A:R.338, B:K.322 PO4.13: 5 residues within 4Å: Chain D: T.264, K.268, R.338 Chain E: K.322, R.326 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:T.358, D:T.358, E:R.326 Water bridges: D:K.268, D:F.359 Salt bridges: D:K.268, D:R.338, E:K.322

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: F.346, Y.382 Chain F: R.338 Ligands: EDO.5 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain F Hydrogen bonds: A:F.346, F:R.338 Water bridges: A:Q.347, F:D.339 EDO.5: 6 residues within 4Å: Chain A: N.343, P.379 Chain F: D.339, Y.374, P.375 Ligands: EDO.4 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:N.343 Water bridges: A:Q.347, F:D.339 EDO.8: 5 residues within 4Å: Chain B: E.263, T.366 Chain C: N.384, N.387, K.451 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain C Hydrogen bonds: B:T.366, C:N.384, C:N.387, C:K.451 Water bridges: B:H.360, B:T.366, B:R.370, C:Y.446 EDO.14: 4 residues within 4Å: Chain C: R.338 Chain D: F.346, Y.382 Ligands: EDO.15 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:F.346, C:R.338 Water bridges: D:Q.347 EDO.15: 6 residues within 4Å: Chain C: D.339, Y.374, P.375 Chain D: N.343, P.379 Ligands: EDO.14 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Water bridges: C:D.339, D:Q.347 Hydrogen bonds: D:N.343 EDO.18: 5 residues within 4Å: Chain E: E.263, T.366 Chain F: N.384, N.387, K.451 7 PLIP interactions: 4 interactions with chain F, 3 interactions with chain E Hydrogen bonds: F:N.384, F:N.387, F:K.451 Water bridges: F:Y.446, E:E.263, E:H.360, E:T.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reindl, S. et al., Insights into FlaI Functions in Archaeal Motor Assembly and Motility from Structures, Conformations, and Genetics. Mol.Cell (2013)

Release Date

2013-03-06

Peptides

FlaI ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

FlaI ATPase