- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.3: 24 residues within 4Å:- Chain A: R.11, V.422, G.423, G.425, A.426, T.451, D.452, M.453, D.454, N.460, R.463, Q.464, K.476, E.500, R.501, V.502, A.524, L.525, D.526, N.527, A.530
- Chain B: G.83
- Ligands: MG.1, MG.2
27 PLIP interactions:24 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:A.426, A:D.454, A:D.454, A:D.454, A:N.460, A:Q.464, A:K.476, A:V.502, A:V.502, A:N.527
- Water bridges: A:R.11, A:G.425, A:D.454, A:R.463, A:R.463, A:R.463, A:R.501, A:R.501, B:G.83, B:G.83, B:G.83
- Salt bridges: A:R.11, A:R.463, A:R.463, A:R.463, A:K.476, A:K.476
- 1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 7 residues within 4Å:- Chain A: H.294, S.297, L.298, R.300, D.306, R.340
- Ligands: SO4.12
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.297, A:S.297, A:D.306, A:R.340
EDO.6: 5 residues within 4Å:- Chain A: T.3, I.4, D.5, Y.9, Y.95
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.5
- Water bridges: A:Y.9
EDO.7: 5 residues within 4Å:- Chain A: R.536, V.539, F.540, F.996
- Ligands: EDO.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.536
EDO.8: 5 residues within 4Å:- Chain A: R.536, R.537, F.540, V.979
- Ligands: EDO.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.537
EDO.9: 7 residues within 4Å:- Chain A: K.35, G.36, L.37, E.119, S.144, R.145, D.342
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:K.35, A:L.37, A:R.145, A:S.347
- Water bridges: A:K.35, A:S.144, A:S.144, A:R.145, A:R.145, A:G.341
EDO.10: 6 residues within 4Å:- Chain A: S.52, T.54, S.99, Y.108, N.111, F.112
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.99, A:S.99, A:N.111
- Water bridges: A:T.54
EDO.14: 7 residues within 4Å:- Chain A: Q.558, E.566, N.874, F.876, I.890
- Chain B: R.49, Q.56
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.566, A:E.566, B:R.49, B:Q.56
- Water bridges: A:Q.558, A:S.571, A:S.571, A:N.874, A:N.874, A:I.890
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.11: 3 residues within 4Å:- Chain A: G.17, H.18, E.19
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.18, A:E.19
- Water bridges: A:L.16, A:A.20, A:K.365
SO4.12: 4 residues within 4Å:- Chain A: S.297, R.300, R.340
- Ligands: EDO.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.297
- Salt bridges: A:R.340
SO4.13: 4 residues within 4Å:- Chain A: R.634, L.776
- Chain C: R.72, Y.145
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain C- Salt bridges: A:R.634, C:R.72
- Hydrogen bonds: C:Y.145, C:Y.145
SO4.15: 2 residues within 4Å:- Chain B: R.36, R.40
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.36, B:R.40
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olsen, S.K. et al., Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol.Cell (2013)
- Release Date
- 2013-02-13
- Peptides
- Ubiquitin-activating enzyme E1 1: A
Ubiquitin-60S ribosomal protein L40: B
Ubiquitin-conjugating enzyme E2 4: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olsen, S.K. et al., Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol.Cell (2013)
- Release Date
- 2013-02-13
- Peptides
- Ubiquitin-activating enzyme E1 1: A
Ubiquitin-60S ribosomal protein L40: B
Ubiquitin-conjugating enzyme E2 4: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C