SMTL ID : 4iip.1

Legionella pneumophila effector

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: D.102, Y.106, V.112, S.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.102 GOL.2: 5 residues within 4Å: Chain A: N.98, L.101, D.102, R.105 Ligands: CL.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.102, A:R.105 GOL.3: 7 residues within 4Å: Chain A: D.65, M.67, S.100, L.101, T.104, Y.141, Q.142 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.65, A:D.65, A:S.100, A:T.104, A:Q.142 Water bridges: A:S.100 GOL.4: 4 residues within 4Å: Chain A: C.9, N.10, G.11, V.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.10, A:G.11

15 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: A.128, P.129, L.130 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: Q.16, S.17 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: M.1, S.3, L.93 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: P.251, G.252 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: N.98, D.102 Ligands: GOL.2 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain A: S.86, F.87, N.90, Y.91 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: Y.121, S.122, S.125 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain A: C.173 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: P.208, D.301, Q.302 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain A: Q.142, K.143, D.144, E.145 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain A: S.109, K.110, N.203 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain A: N.191, I.192, D.193, L.194 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain A: Y.77, G.78 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain A: E.176, V.177, F.180, K.181 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain A: P.107, S.109, N.203 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD. Plos Pathog. (2013)

Release Date

2013-06-19

Peptides

Adenosine monophosphate-protein hydrolase SidD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenosine monophosphate-protein hydrolase SidD