SMTL ID : 4iiw.2 (1 other biounit)

2.6 Angstrom Crystal Structure of Putative yceG-like Protein lmo1499 from Listeria monocytogenes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-octamer

Ligands

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: N.63, N.64 Chain D: K.73 Ligands: CL.43 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Ligands: CL.10, CL.18, CL.26 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Ligands: CL.11, CL.19, CL.27 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: N.63, N.64 Chain C: K.73 Ligands: CL.48 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Ligands: CL.2, CL.18, CL.26 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Ligands: CL.3, CL.19, CL.27 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain A: K.73 Chain C: N.63, N.64 Ligands: CL.38 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Ligands: CL.2, CL.10, CL.26 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Ligands: CL.3, CL.11, CL.27 Ligand excluded by PLIP CL.25: 4 residues within 4Å: Chain B: K.73 Chain D: N.63, N.64 Ligands: CL.33 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Ligands: CL.2, CL.10, CL.18 Ligand excluded by PLIP CL.27: 3 residues within 4Å: Ligands: CL.3, CL.11, CL.19 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain E: N.63, N.64 Chain G: K.73 Ligands: CL.25 Ligand excluded by PLIP CL.34: 7 residues within 4Å: Ligands: CL.35, CL.39, CL.40, CL.44, CL.45, CL.49, CL.50 Ligand excluded by PLIP CL.35: 7 residues within 4Å: Ligands: CL.34, CL.39, CL.40, CL.44, CL.45, CL.49, CL.50 Ligand excluded by PLIP CL.38: 4 residues within 4Å: Chain F: N.63, N.64 Chain H: K.73 Ligands: CL.17 Ligand excluded by PLIP CL.39: 7 residues within 4Å: Ligands: CL.34, CL.35, CL.40, CL.44, CL.45, CL.49, CL.50 Ligand excluded by PLIP CL.40: 7 residues within 4Å: Ligands: CL.34, CL.35, CL.39, CL.44, CL.45, CL.49, CL.50 Ligand excluded by PLIP CL.43: 4 residues within 4Å: Chain F: K.73 Chain G: N.63, N.64 Ligands: CL.1 Ligand excluded by PLIP CL.44: 7 residues within 4Å: Ligands: CL.34, CL.35, CL.39, CL.40, CL.45, CL.49, CL.50 Ligand excluded by PLIP CL.45: 7 residues within 4Å: Ligands: CL.34, CL.35, CL.39, CL.40, CL.44, CL.49, CL.50 Ligand excluded by PLIP CL.48: 4 residues within 4Å: Chain E: K.73 Chain H: N.63, N.64 Ligands: CL.9 Ligand excluded by PLIP CL.49: 7 residues within 4Å: Ligands: CL.34, CL.35, CL.39, CL.40, CL.44, CL.45, CL.50 Ligand excluded by PLIP CL.50: 7 residues within 4Å: Ligands: CL.34, CL.35, CL.39, CL.40, CL.44, CL.45, CL.49 Ligand excluded by PLIP

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: S.48, I.49 Chain C: N.63 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: N.79, K.81, K.132 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain A: N.165 Ligand excluded by PLIP SO4.7: 1 residues within 4Å: Chain A: R.255 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: S.48, I.49 Chain D: N.63 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: N.79, K.81, K.132 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain B: N.165 Ligand excluded by PLIP SO4.15: 1 residues within 4Å: Chain B: R.255 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: N.63 Chain C: S.48, I.49 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain C: N.79, K.81, K.132 Ligand excluded by PLIP SO4.22: 1 residues within 4Å: Chain C: N.165 Ligand excluded by PLIP SO4.23: 1 residues within 4Å: Chain C: R.255 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain A: N.63 Chain D: S.48, I.49 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain D: N.79, K.81, K.132 Ligand excluded by PLIP SO4.30: 1 residues within 4Å: Chain D: N.165 Ligand excluded by PLIP SO4.31: 1 residues within 4Å: Chain D: R.255 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain E: S.48, I.49 Chain H: N.63 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain B: K.327, Y.329 Chain E: A.179, T.180 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain F: S.48, I.49 Chain G: N.63 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain A: K.327, Y.329 Chain F: A.179, T.180 Ligand excluded by PLIP SO4.46: 3 residues within 4Å: Chain E: N.63 Chain G: S.48, I.49 Ligand excluded by PLIP SO4.47: 4 residues within 4Å: Chain D: K.327, Y.329 Chain G: A.179, T.180 Ligand excluded by PLIP SO4.51: 3 residues within 4Å: Chain F: N.63 Chain H: S.48, I.49 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain C: K.327, Y.329 Chain H: A.179, T.180 Ligand excluded by PLIP

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 4 residues within 4Å: Chain F: F.70 Chain G: F.70 Ligands: PGE.24, PGE.32 No protein-ligand interaction detected (PLIP) PGE.16: 4 residues within 4Å: Chain E: F.70 Chain H: F.70 Ligands: PGE.24, PGE.32 No protein-ligand interaction detected (PLIP) PGE.24: 4 residues within 4Å: Chain F: F.70 Chain H: F.70 Ligands: PGE.8, PGE.16 No protein-ligand interaction detected (PLIP) PGE.32: 4 residues within 4Å: Chain E: F.70 Chain G: F.70 Ligands: PGE.8, PGE.16 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 2.6 Angstrom Crystal Structure of Putative yceG-like Protein lmo1499 from Listeria monocytogenes. TO BE PUBLISHED

Release Date

2013-01-16

Peptides

Lmo1499 protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
B

F
B

G
B

H
B

Lmo1499 protein

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