SMTL ID : 4iiy.1

Structure of MccF in complex with glutamyl sulfamoyl inosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x 1EI: 5'-O-(L-alpha-glutamylsulfamoyl)inosine(Non-covalent)

1EI.1: 17 residues within 4Å: Chain A: I.117, G.118, G.119, Y.144, A.145, D.146, S.210, W.213, N.245, N.247, T.248, S.272, R.273, K.274, E.304, H.338 Ligands: EDO.8 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.118, A:G.119, A:D.146, A:N.247, A:R.273, A:E.304, A:H.338, A:H.338 Water bridges: A:S.210, A:D.271, A:S.272, A:S.272, A:S.272, A:S.272, A:K.274, A:E.304 Salt bridges: A:K.274 pi-Stacking: A:W.213, A:W.213, A:W.213 1EI.9: 17 residues within 4Å: Chain B: I.117, G.118, G.119, Y.144, A.145, D.146, P.170, S.210, W.213, N.245, N.247, T.248, S.272, R.273, K.274, E.304, H.338 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:G.118, B:G.119, B:D.146, B:N.247, B:R.273, B:E.304, B:H.338, B:H.338 Water bridges: B:Y.144, B:S.210, B:N.245, B:S.272, B:S.272, B:S.272, B:K.274, B:E.304 Salt bridges: B:K.274 pi-Stacking: B:W.213, B:W.213, B:W.213, B:W.213

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: K.287, L.288, R.290 Chain B: P.127, E.256, W.257 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.290 EDO.3: 5 residues within 4Å: Chain A: W.253, P.259, E.260, I.261, K.294 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.261, A:K.294 EDO.4: 5 residues within 4Å: Chain A: K.188, R.192, S.195, I.197, Y.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.188, A:K.188, A:R.192, A:I.197 EDO.5: 10 residues within 4Å: Chain A: R.192, Q.194, G.196, I.197, Y.198, I.362, T.363, E.364, Q.365, Y.366 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.192, A:R.192, A:Q.194, A:Y.198, A:I.362 EDO.6: 6 residues within 4Å: Chain A: I.269, E.270, D.271, G.301, H.303, P.315 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.271, A:H.303 EDO.7: 4 residues within 4Å: Chain A: V.105, A.133, A.136, N.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.133 EDO.8: 3 residues within 4Å: Chain A: G.119, D.120 Ligands: 1EI.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.119, A:D.120 EDO.10: 6 residues within 4Å: Chain B: I.269, E.270, D.271, G.301, H.303, P.315 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.271 EDO.11: 5 residues within 4Å: Chain B: W.253, P.259, E.260, I.261, K.294 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.261, B:K.294 EDO.12: 5 residues within 4Å: Chain A: P.127, W.257 Chain B: K.287, L.288, R.290 No protein-ligand interaction detected (PLIP) EDO.13: 5 residues within 4Å: Chain B: K.188, R.192, S.195, I.197, Y.198 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.188, B:K.188, B:R.192, B:G.196 Water bridges: B:S.195 EDO.14: 4 residues within 4Å: Chain B: P.39, A.41, D.44, T.111 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.44 EDO.15: 9 residues within 4Å: Chain B: R.192, Q.194, G.196, I.197, Y.198, I.362, E.364, Q.365, Y.366 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.192, B:R.192, B:Q.194, B:Y.198, B:I.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agarwal, V. et al., Structure of MccF with substrate analogs. To be Published

Release Date

2013-12-25

Peptides

MccF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MccF

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