SMTL ID : 4ij5.1

Crystal Structure of a Novel-type Phosphoserine Phosphatase from <i>Hydrogenobacter thermophilus</i> TK-6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: R.8, H.9, N.15, Q.21, I.211 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: K.130, L.133, R.137, M.184, N.189 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.160, A:N.189 Water bridges: A:R.137, A:N.189 EDO.3: 3 residues within 4Å: Chain A: W.14, V.17, R.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.14, A:R.19 EDO.4: 5 residues within 4Å: Chain A: V.108, W.170, K.209, A.210 Chain B: R.188 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.188, A:A.210 Water bridges: B:E.185 EDO.5: 5 residues within 4Å: Chain B: L.133, R.137, A.160, M.184, N.189 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.160, B:N.189 Water bridges: B:R.137, B:N.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chiba, Y. et al., Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis. J.Biol.Chem. (2013)

Release Date

2013-03-20

Peptides

Phosphoserine phosphatase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphoserine phosphatase 1