- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.35 Å
- Oligo State
- homo-hexamer
- Ligands
- 7 x MG: MAGNESIUM ION(Non-covalent)
- 12 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 25 residues within 4Å:- Chain A: T.277, G.278, T.279, G.280, K.281, T.282, L.283, E.305, E.306, W.318, Y.429, R.438, I.459, S.460, D.461
- Chain B: K.444, M.445, R.446, G.447, S.448, W.449, H.450, K.452
- Ligands: MG.1, MG.10
20 PLIP interactions:15 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:G.278, A:G.280, A:K.281, A:T.282, A:T.282, A:T.282, A:L.283, A:Y.429, A:Y.429, A:R.438, A:R.438, A:D.461, A:D.461, B:M.445, B:H.450, B:K.452
- Salt bridges: A:K.281, A:K.281, B:K.444, B:R.446
ATP.3: 20 residues within 4Å:- Chain A: S.35, G.36, T.37, G.38, K.39, T.40, L.41, S.76, F.77, R.205, I.226, T.227, D.228
- Chain B: L.210, K.211, R.213, T.215, S.216, H.217, K.219
19 PLIP interactions:5 interactions with chain B, 14 interactions with chain A- Hydrogen bonds: B:L.212, B:H.217, A:G.36, A:G.36, A:T.37, A:G.38, A:K.39, A:T.40, A:T.40, A:L.41, A:S.76, A:R.205, A:R.205, A:D.228
- Salt bridges: B:K.211, B:K.211, B:R.213, A:K.39, A:K.39
ATP.4: 22 residues within 4Å:- Chain A: F.186, L.210, K.211, L.212, R.213, T.215, S.216, H.217, K.219
- Chain F: T.34, S.35, G.36, T.37, G.38, K.39, T.40, L.41, S.76, F.77, I.226, T.227, D.228
21 PLIP interactions:15 interactions with chain F, 6 interactions with chain A- Hydrogen bonds: F:G.36, F:G.36, F:T.37, F:G.38, F:K.39, F:T.40, F:T.40, F:T.40, F:L.41, F:S.76, F:D.228, F:D.228, A:L.212, A:H.217, A:K.219
- Water bridges: F:R.205
- Salt bridges: F:K.39, F:K.39, A:K.211, A:K.211, A:R.213
ATP.6: 23 residues within 4Å:- Chain B: T.277, G.278, T.279, G.280, K.281, T.282, L.283, E.305, S.317, W.318, R.438, I.459, S.460, D.461
- Chain C: K.444, M.445, R.446, G.447, S.448, W.449, H.450, K.452
- Ligands: MG.5
17 PLIP interactions:13 interactions with chain B, 4 interactions with chain C- Hydrogen bonds: B:G.278, B:G.278, B:G.280, B:K.281, B:T.282, B:T.282, B:L.283, B:T.402, B:R.438, B:D.461, B:D.461, C:M.445, C:H.450
- Salt bridges: B:K.281, B:K.281, C:K.444, C:R.446
ATP.7: 20 residues within 4Å:- Chain B: S.35, G.36, T.37, G.38, K.39, T.40, L.41, S.76, F.77, I.226, T.227, D.228
- Chain C: L.210, K.211, L.212, R.213, T.215, S.216, H.217, K.219
19 PLIP interactions:14 interactions with chain B, 5 interactions with chain C- Hydrogen bonds: B:G.36, B:G.36, B:T.37, B:T.37, B:G.38, B:K.39, B:T.40, B:T.40, B:T.40, B:L.41, B:S.76, B:D.228, C:L.212, C:H.217, C:K.219
- Salt bridges: B:K.39, B:K.39, C:K.211, C:R.213
ATP.12: 23 residues within 4Å:- Chain C: T.277, G.278, T.279, G.280, K.281, T.282, L.283, E.305, S.317, W.318, R.438, I.459, D.461
- Chain D: T.419, K.444, M.445, R.446, G.447, S.448, W.449, H.450, K.452
- Ligands: MG.11
24 PLIP interactions:19 interactions with chain C, 5 interactions with chain D- Hydrogen bonds: C:T.277, C:T.277, C:G.278, C:G.278, C:T.279, C:T.279, C:G.280, C:K.281, C:T.282, C:T.282, C:L.283, C:R.438, C:R.438, C:D.461, C:D.461, D:M.445, D:R.446, D:H.450
- Water bridges: C:K.281, C:T.402
- Salt bridges: C:K.281, C:K.281, D:K.444, D:R.446
ATP.13: 23 residues within 4Å:- Chain C: S.35, G.36, T.37, G.38, K.39, T.40, L.41, E.65, S.76, F.77, I.226, T.227, D.228
- Chain D: F.186, L.210, K.211, L.212, R.213, G.214, T.215, S.216, H.217, K.219
25 PLIP interactions:18 interactions with chain C, 7 interactions with chain D- Hydrogen bonds: C:G.36, C:G.36, C:T.37, C:T.37, C:T.37, C:G.38, C:K.39, C:T.40, C:T.40, C:L.41, C:E.65, C:S.76, C:R.205, C:D.228, D:L.212, D:H.217, D:K.219
- Water bridges: C:K.39, C:K.39, D:G.214
- Salt bridges: C:K.39, C:K.39, D:K.211, D:K.211, D:R.213
ATP.16: 23 residues within 4Å:- Chain D: T.277, G.278, T.279, G.280, K.281, T.282, L.283, E.305, E.306, S.317, W.318, R.438, I.459, S.460
- Chain E: K.444, M.445, R.446, G.447, S.448, W.449, H.450, K.452
- Ligands: MG.15
21 PLIP interactions:16 interactions with chain D, 5 interactions with chain E- Hydrogen bonds: D:T.277, D:G.278, D:G.278, D:T.279, D:T.279, D:G.280, D:K.281, D:T.282, D:T.282, D:T.282, D:L.283, D:E.305, D:R.438, D:R.438, E:M.445, E:G.447, E:H.450
- Salt bridges: D:K.281, D:K.281, E:K.444, E:R.446
ATP.17: 21 residues within 4Å:- Chain D: T.34, G.36, T.37, G.38, K.39, T.40, L.41, E.65, S.76, F.77, I.226, T.227, D.228
- Chain E: L.210, K.211, L.212, R.213, T.215, S.216, H.217, K.219
20 PLIP interactions:6 interactions with chain E, 14 interactions with chain D- Hydrogen bonds: E:L.212, E:H.217, E:K.219, D:G.36, D:G.36, D:T.37, D:T.37, D:G.38, D:K.39, D:T.40, D:T.40, D:L.41, D:E.65, D:S.76, D:D.228
- Salt bridges: E:K.211, E:K.211, E:R.213, D:K.39, D:K.39
ATP.20: 21 residues within 4Å:- Chain E: T.277, G.278, T.279, G.280, K.281, T.282, L.283, E.305, S.317, W.318, R.438, I.459, S.460
- Chain F: K.444, M.445, R.446, S.448, W.449, H.450, K.452
- Ligands: MG.19
20 PLIP interactions:7 interactions with chain F, 13 interactions with chain E- Hydrogen bonds: F:M.445, F:G.447, F:H.450, E:T.277, E:T.277, E:G.278, E:G.278, E:G.280, E:K.281, E:T.282, E:T.282, E:L.283, E:R.438, E:R.438
- Water bridges: F:R.446, F:R.446
- Salt bridges: F:K.444, F:R.446, E:K.281, E:K.281
ATP.21: 22 residues within 4Å:- Chain E: G.36, T.37, G.38, K.39, T.40, L.41, E.65, S.76, F.77, D.132, R.205, I.226, T.227, D.228
- Chain F: L.210, K.211, L.212, R.213, T.215, S.216, H.217, K.219
19 PLIP interactions:13 interactions with chain E, 6 interactions with chain F- Hydrogen bonds: E:G.36, E:G.36, E:T.37, E:G.38, E:K.39, E:T.40, E:T.40, E:L.41, E:S.76, E:R.205, E:D.228, F:L.212, F:H.217, F:K.219
- Salt bridges: E:K.39, E:K.39, F:K.211, F:K.211, F:R.213
ATP.25: 23 residues within 4Å:- Chain A: K.444, M.445, R.446, G.447, S.448, W.449, H.450, K.452
- Chain F: T.277, G.278, T.279, G.280, K.281, T.282, L.283, E.305, S.317, W.318, R.438, I.459, S.460, D.461
- Ligands: MG.24
16 PLIP interactions:4 interactions with chain A, 12 interactions with chain F- Hydrogen bonds: A:M.445, A:H.450, F:G.278, F:G.278, F:G.280, F:K.281, F:T.282, F:L.283, F:R.438, F:R.438, F:D.461, F:D.461
- Salt bridges: A:K.444, A:R.446, F:K.281, F:K.281
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 4 residues within 4Å:- Chain A: D.142, Y.181
- Chain B: S.144, S.145
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.139, A:Y.181, B:S.145, B:S.145
PO4.9: 5 residues within 4Å:- Chain B: T.34, E.174, N.196, R.203
- Chain C: I.178
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.34
- Salt bridges: B:R.203
PO4.14: 7 residues within 4Å:- Chain C: T.34, I.172, E.174, N.196, R.203
- Chain D: I.178, L.210
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.34, C:E.174
- Salt bridges: C:R.203
PO4.18: 6 residues within 4Å:- Chain D: T.34, E.174, N.196, R.203
- Chain E: I.178, L.210
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.34, D:E.174, D:E.174
- Salt bridges: D:R.203
PO4.22: 7 residues within 4Å:- Chain E: F.138, Q.139, Y.141, D.142, Y.181
- Chain F: S.144, S.145
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:S.145, F:S.145, E:F.138, E:D.142
PO4.23: 5 residues within 4Å:- Chain E: T.34, E.174, R.203
- Chain F: G.176, I.178
7 PLIP interactions:7 interactions with chain E- Hydrogen bonds: E:T.34, E:T.34, E:E.174
- Water bridges: E:S.35, E:I.172, E:E.174
- Salt bridges: E:R.203
PO4.26: 5 residues within 4Å:- Chain A: I.178, L.210
- Chain F: T.34, E.174, R.203
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:T.34, F:T.34, F:T.34
- Salt bridges: F:R.203
PO4.27: 4 residues within 4Å:- Chain A: K.219
- Chain F: R.205, T.225, I.226
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain F- Salt bridges: A:K.219, F:R.205
- Hydrogen bonds: F:I.226
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egli, M. et al., Loop-Loop Interactions Regulate KaiA-Stimulated KaiC Phosphorylation in the Cyanobacterial KaiABC Circadian Clock. Biochemistry (2013)
- Release Date
- 2013-02-13
- Peptides
- Circadian clock protein kinase KaiC: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.35 Å
- Oligo State
- homo-hexamer
- Ligands
- 7 x MG: MAGNESIUM ION(Non-covalent)
- 12 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Egli, M. et al., Loop-Loop Interactions Regulate KaiA-Stimulated KaiC Phosphorylation in the Cyanobacterial KaiABC Circadian Clock. Biochemistry (2013)
- Release Date
- 2013-02-13
- Peptides
- Circadian clock protein kinase KaiC: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F