SMTL ID : 4ijt.1

Human p53 core domain with hot spot mutation R273H (form II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149 ZN.2: 2 residues within 4Å: Chain A: C.89 Ligands: DTT.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.89

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 3 residues within 4Å: Chain A: C.89, S.90 Ligands: ZN.2 No protein-ligand interaction detected (PLIP)

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: K.8, L.171, R.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.174, A:R.174 Water bridges: A:S.6 EDO.5: 2 residues within 4Å: Chain A: T.138, H.140 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.131, A:T.138, A:T.138, A:T.138 EDO.6: 4 residues within 4Å: Chain A: L.21, S.23, C.31, P.49 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.23 Water bridges: A:S.23, A:T.30, A:C.31, A:C.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eldar, A. et al., Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions. Nucleic Acids Res. (2013)

Release Date

2013-08-14

Peptides

Cellular tumor antigen p53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellular tumor antigen p53

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