SMTL ID : 4ijz.1

Crystal structure of diaminopimelate epimerase from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

3 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 6 residues within 4Å: Chain A: A.132, N.133, K.134, E.136, Y.139, R.184 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.133, A:N.133, A:K.134, A:R.184 Water bridges: A:I.140 NO3.2: 3 residues within 4Å: Chain A: A.18, V.23, E.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.49 Water bridges: A:V.23 NO3.3: 6 residues within 4Å: Chain B: A.132, N.133, K.134, E.136, Y.139, R.184 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.133, B:N.133, B:K.134, B:K.134, B:R.184 Water bridges: B:I.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hor, L. et al., Dimerization of bacterial diaminopimelate epimerase is essential for catalysis. J.Biol.Chem. (2013)

Release Date

2013-02-20

Peptides

Diaminopimelate epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Diaminopimelate epimerase