SMTL ID : 4ik0.1

Crystal structure of diaminopimelate epimerase Y268A mutant from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

13 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: G.76, R.78, C.79 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: N.133 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: N.11, R.78, G.218 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: A.171, L.175 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: H.201, R.203, E.241 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: H.37 Chain B: R.36 Ligands: IOD.13 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain B: G.76, R.78, C.79 Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain B: N.133 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain B: N.11, R.78, G.218 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain B: A.171, L.175 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain B: R.103, M.104, V.105 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain B: H.201, R.203, E.241 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: R.36 Chain B: H.37 Ligands: IOD.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hor, L. et al., Dimerization of bacterial diaminopimelate epimerase is essential for catalysis. J.Biol.Chem. (2013)

Release Date

2013-02-20

Peptides

Diaminopimelate epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Diaminopimelate epimerase