SMTL ID : 4ikm.1

X-ray structure of CARD8 CARD domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156, A:R.345

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 1 residues within 4Å: Chain A: Y.243 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: P.272, K.274, E.275 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: E.292, K.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.296, A:K.296 EDO.5: 6 residues within 4Å: Chain A: A.97, Y.177, I.330, M.331, P.332, N.333 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.333, A:N.333 Water bridges: A:N.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T. et al., The structure of the CARD8 caspase-recruitment domain suggests its association with the FIIND domain and procaspases through adjacent surfaces. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-05-08

Peptides

Maltose-binding periplasmic protein, Caspase recruitment domain-containing protein 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding periplasmic protein, Caspase recruitment domain-containing protein 8