SMTL ID : 4ikp.1 (1 other biounit)

Crystal structure of coactivator-associated arginine methyltransferase 1 with methylenesinefungin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 4IK: (2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}hexanoic acid(Non-covalent)

4IK.1: 22 residues within 4Å: Chain A: Y.10, F.11, Y.14, Q.20, M.23, R.29, G.53, C.54, G.55, S.56, I.58, L.59, E.75, A.76, G.101, K.102, V.103, E.104, E.118, M.129, S.132 Ligands: GOL.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.14 Hydrogen bonds: A:Y.14, A:Q.20, A:G.53, A:C.54, A:G.55, A:S.56, A:A.76, A:V.103, A:E.104, A:E.127, A:S.132 Water bridges: A:Y.14, A:R.29, A:E.118, A:E.118 Salt bridges: A:R.29 pi-Stacking: A:F.11 4IK.13: 21 residues within 4Å: Chain B: Y.10, F.11, Y.14, Q.20, M.23, R.29, G.53, C.54, G.55, I.58, L.59, E.75, A.76, S.77, G.101, K.102, V.103, E.104, E.118, M.129, S.132 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Q.20, B:G.53, B:A.76, B:V.103, B:E.104, B:E.118, B:S.132 Water bridges: B:Y.14, B:Q.20, B:Q.20, B:G.57 Salt bridges: B:R.29 pi-Stacking: B:F.11

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Y.10, E.127, R.128, M.129, S.132, Q.307 Ligands: 4IK.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.132 Water bridges: A:R.128

25 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: Q.81, V.85 Ligand excluded by PLIP UNX.4: 1 residues within 4Å: Chain A: W.264 Ligand excluded by PLIP UNX.5: 1 residues within 4Å: Chain A: H.275 Ligand excluded by PLIP UNX.6: 1 residues within 4Å: Chain A: S.213 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: P.269, T.270 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: V.85, K.88 Ligand excluded by PLIP UNX.9: 1 residues within 4Å: Chain A: Y.175 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: F.13, E.127 Ligand excluded by PLIP UNX.11: 1 residues within 4Å: Chain A: H.238 Ligand excluded by PLIP UNX.12: 2 residues within 4Å: Chain A: D.193, R.197 Ligand excluded by PLIP UNX.14: 1 residues within 4Å: Chain B: H.229 Ligand excluded by PLIP UNX.15: 1 residues within 4Å: Chain B: E.271 Ligand excluded by PLIP UNX.16: 1 residues within 4Å: Chain B: R.69 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain B: Q.34, L.38, Q.65 Ligand excluded by PLIP UNX.18: 2 residues within 4Å: Chain B: L.221 Ligands: UNX.22 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain B: V.314, K.323 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain B: R.35, Q.39 Ligand excluded by PLIP UNX.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.22: 5 residues within 4Å: Chain B: N.145, T.149, L.221, I.257 Ligands: UNX.18 Ligand excluded by PLIP UNX.23: 3 residues within 4Å: Chain B: R.128, S.132 Ligands: UNX.24 Ligand excluded by PLIP UNX.24: 3 residues within 4Å: Chain B: E.127, Q.307 Ligands: UNX.23 Ligand excluded by PLIP UNX.25: 1 residues within 4Å: Chain B: F.13 Ligand excluded by PLIP UNX.26: 2 residues within 4Å: Chain B: L.273, Y.277 Ligand excluded by PLIP UNX.27: 1 residues within 4Å: Chain B: Q.39 Ligand excluded by PLIP UNX.28: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cai, X.C. et al., A chemical probe of CARM1 alters epigenetic plasticity against breast cancer cell invasion. Elife (2019)

Release Date

2013-02-13

Peptides

Histone-arginine methyltransferase CARM1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-arginine methyltransferase CARM1

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