SMTL ID : 4il0.1 (1 other biounit)

Crystal structure of GlucDRP from E. coli K-12 MG1655 (EFI target EFI-506058)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 12 residues within 4Å: Chain A: N.46, I.47, H.51, W.123, F.125, F.171, K.226, N.256, H.358, N.360, H.387, R.441 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:N.46, A:F.125, A:K.226 Hydrogen bonds: A:N.46, A:N.46, A:N.256, A:N.256, A:R.441, A:R.441 Salt bridges: A:H.51, A:K.226, A:K.226, A:K.226, A:H.358, A:H.387, A:R.441 CIT.2: 12 residues within 4Å: Chain B: N.46, I.47, H.51, W.123, F.125, F.171, K.226, N.256, H.358, N.360, H.387, R.441 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:N.46, B:N.46, B:N.256, B:N.256, B:R.441, B:R.441 Salt bridges: B:H.51, B:K.226, B:K.226, B:K.226, B:H.358, B:H.387, B:R.441 CIT.3: 9 residues within 4Å: Chain C: N.46, I.47, H.51, F.171, K.226, N.256, H.358, N.360, H.387 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:K.226 Hydrogen bonds: C:N.46, C:N.46, C:N.256 Salt bridges: C:H.51, C:K.226, C:K.226, C:K.226, C:H.358, C:H.387 CIT.5: 12 residues within 4Å: Chain D: N.46, I.47, H.51, W.123, F.125, F.171, K.226, N.256, H.358, N.360, H.387, R.441 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:N.46, D:N.46, D:N.256, D:N.256, D:N.360, D:R.441, D:R.441 Salt bridges: D:H.51, D:K.226, D:K.226, D:K.226, D:H.358, D:H.387, D:R.441

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain C: G.189, N.190, H.191, Y.194, R.217 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.190, C:N.190, C:H.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lukk, T. et al., Glucarate dehydratase and its related protein from Escherichia coli form a heterotetrameric complex. to be published

Release Date

2013-01-16

Peptides

Glucarate dehydratase-related protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

D
F

Glucarate dehydratase-related protein

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