SMTL ID : 4il2.2 (1 other biounit)

Crystal structure of D-mannonate dehydratase (rspA) from E. coli CFT073 (EFI TARGET EFI-501585)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-octamer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.234, E.260, D.261, E.286 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.234, A:D.234, A:E.260, A:E.286, H2O.3 MG.2: 5 residues within 4Å: Chain B: D.234, E.260, D.261, E.286 Chain E: Y.97 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.234, B:D.234, B:E.260, B:D.261, B:E.286 MG.3: 4 residues within 4Å: Chain C: D.234, E.260, D.261, E.286 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.234, C:D.234, C:E.260, C:E.286, H2O.11 MG.4: 5 residues within 4Å: Chain D: D.234, E.260, D.261, E.286 Chain G: Y.97 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.234, D:D.234, D:E.260, D:D.261, D:E.286 MG.5: 4 residues within 4Å: Chain E: D.234, E.260, D.261, E.286 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.234, E:D.234, E:E.260, E:E.286, H2O.20 MG.6: 5 residues within 4Å: Chain C: Y.97 Chain F: D.234, E.260, D.261, E.286 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.234, F:D.234, F:E.260, F:D.261, F:E.286 MG.7: 4 residues within 4Å: Chain G: D.234, E.260, D.261, E.286 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.234, G:D.234, G:E.260, G:E.286, H2O.28 MG.8: 5 residues within 4Å: Chain A: Y.97 Chain H: D.234, E.260, D.261, E.286 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.234, H:D.234, H:E.260, H:D.261, H:E.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wichelecki, S. et al., Mannonate degradation pathway in E. coli CFT073. To be Published

Release Date

2013-02-20

Peptides

Starvation sensing protein rspA: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

E
C

F
D

G
C

H
D

Starvation sensing protein rspA

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