SMTL ID : 4ild.1

Crystal structure of truncated Bovine viral diarrhea virus 1 E2 envelope protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.27 Å

Oligo State

homo-dimer

Ligands

8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.32 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: C.45, G.82, I.84, N.101 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: Q.86, K.113, N.145, E.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.113 NAG-NAG.4: 2 residues within 4Å: Chain A: S.200, N.213 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain B: N.32, W.102 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain B: G.82, N.101 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain B: G.114, G.115, N.145 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.115 NAG-NAG.8: 3 residues within 4Å: Chain B: S.200, N.213, W.242 No protein-ligand interaction detected (PLIP)

4 x CA: CALCIUM ION(Non-covalent)

CA.9: 2 residues within 4Å: Chain A: D.11, N.13 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.11 CA.10: 1 residues within 4Å: Chain A: D.108 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.108, A:D.108 CA.11: 2 residues within 4Å: Chain A: L.170, K.171 No protein-ligand interaction detected (PLIP) CA.12: 1 residues within 4Å: Chain B: D.244 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.244, B:D.244

4 x IUM: URANYL (VI) ION(Non-covalent)

IUM.13: 1 residues within 4Å: Chain B: E.197 No protein-ligand interaction detected (PLIP) IUM.14: 4 residues within 4Å: Chain B: E.129, E.131, K.176 Ligands: IUM.15 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.131, B:K.176, B:K.176, B:K.176 IUM.15: 4 residues within 4Å: Chain B: E.129, S.130, E.131 Ligands: IUM.14 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.130 IUM.16: 1 residues within 4Å: Chain B: D.22 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Crystal structure of glycoprotein E2 from bovine viral diarrhea virus. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-04-10

Peptides

Envelope glycoprotein E2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Envelope glycoprotein E2