- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: G.1, F.2, K.3, D.116
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:F.2, A:K.3
- Water bridges: A:Q.4, A:S.119
SO4.3: 5 residues within 4Å:- Chain A: R.32, V.39, G.40
- Ligands: IPA.4, IPA.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.40
- Salt bridges: A:R.32
SO4.14: 6 residues within 4Å:- Chain B: D.30, E.31, R.33, Y.34, N.96, K.99
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.31, B:N.96
- Water bridges: B:Y.34, B:Y.34
- Salt bridges: B:R.33, B:K.99
SO4.15: 4 residues within 4Å:- Chain B: K.27, Y.28, P.29, D.30
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.27, B:D.30, B:D.30, B:D.30
- 7 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.4: 4 residues within 4Å:- Chain A: L.25, P.29, R.32
- Ligands: SO4.3
2 PLIP interactions:2 interactions with chain A- Water bridges: A:P.29, A:R.32
IPA.5: 2 residues within 4Å:- Chain A: S.111, G.112
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.112
IPA.6: 7 residues within 4Å:- Chain A: M.108, R.109, S.111, Q.113, S.114, F.115
- Ligands: IPA.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.113, A:F.115
IPA.7: 2 residues within 4Å:- Chain A: L.76, A.77
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.76, A:A.77
- Hydrogen bonds: A:A.77, A:S.78
IPA.8: 3 residues within 4Å:- Chain A: S.114, F.115
- Ligands: IPA.6
No protein-ligand interaction detected (PLIP)IPA.9: 7 residues within 4Å:- Chain A: L.22, R.32, K.41, S.42, D.43, L.46
- Ligands: SO4.3
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.22, A:L.46
- Hydrogen bonds: A:R.32, A:R.32
- Water bridges: A:D.43
IPA.10: 3 residues within 4Å:- Chain A: Y.28, P.29, D.30
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:P.29, A:D.30
- Water bridges: A:K.99, A:K.99
- 1 x TBP: 2,4,6-TRIBROMOPHENOL(Covalent)
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, J. et al., Structural and Kinetic Study of an Internal Substrate Binding Site in Dehaloperoxidase-Hemoglobin A from Amphitrite ornata. Biochemistry (2013)
- Release Date
- 2013-03-27
- Peptides
- Dehaloperoxidase A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 7 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- 1 x TBP: 2,4,6-TRIBROMOPHENOL(Covalent)
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, J. et al., Structural and Kinetic Study of an Internal Substrate Binding Site in Dehaloperoxidase-Hemoglobin A from Amphitrite ornata. Biochemistry (2013)
- Release Date
- 2013-03-27
- Peptides
- Dehaloperoxidase A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B