SMTL ID : 4im3.1

Structure of Tank-Binding Kinase 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.34 Å

Oligo State

homo-dimer

Ligands

2 x BX7: N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide(Non-covalent)

BX7.1: 19 residues within 4Å: Chain A: L.21, Q.23, G.24, A.27, A.42, K.44, M.92, E.93, F.94, C.95, G.98, S.99, Y.101, T.102, G.145, M.148, T.162, D.163 Ligands: CL.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.21, A:F.94 Hydrogen bonds: A:C.95, A:C.95 BX7.8: 19 residues within 4Å: Chain B: L.21, Q.23, G.24, A.27, A.42, K.44, M.92, E.93, F.94, C.95, G.98, S.99, Y.101, T.102, G.145, M.148, T.162, D.163 Ligands: CL.14 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.21, B:F.94 Hydrogen bonds: B:C.95, B:C.95

10 x HG: MERCURY (II) ION(Non-covalent)

HG.2: 4 residues within 4Å: Chain A: C.477, Q.654 Chain B: F.476, K.483 No protein-ligand interaction detected (PLIP) HG.3: 3 residues within 4Å: Chain A: S.108, C.429 Ligands: HG.4 No protein-ligand interaction detected (PLIP) HG.4: 3 residues within 4Å: Chain A: C.432, R.433 Ligands: HG.3 No protein-ligand interaction detected (PLIP) HG.5: 2 residues within 4Å: Chain A: C.564, I.568 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.564 HG.6: 1 residues within 4Å: Chain A: C.97 No protein-ligand interaction detected (PLIP) HG.9: 4 residues within 4Å: Chain A: F.476, K.483 Chain B: C.477, Q.654 No protein-ligand interaction detected (PLIP) HG.10: 3 residues within 4Å: Chain B: S.108, C.429 Ligands: HG.11 No protein-ligand interaction detected (PLIP) HG.11: 3 residues within 4Å: Chain B: C.432, R.433 Ligands: HG.10 No protein-ligand interaction detected (PLIP) HG.12: 2 residues within 4Å: Chain B: C.564, I.568 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.564 HG.13: 1 residues within 4Å: Chain B: C.97 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 5 residues within 4Å: Chain A: K.44, M.92, T.162, D.163 Ligands: BX7.1 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain B: K.44, M.92, T.162, D.163 Ligands: BX7.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tu, D. et al., Structure and ubiquitination-dependent activation of TANK-binding kinase 1. Cell Rep (2013)

Release Date

2013-03-06

Peptides

Serine/threonine-protein kinase TBK1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Serine/threonine-protein kinase TBK1

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