- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: L.161, N.182, H.183
No protein-ligand interaction detected (PLIP)EDO.3: 7 residues within 4Å:- Chain A: F.189, D.190, E.191, T.208, I.242, L.246, L.250
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.190, A:D.190
- Water bridges: A:S.207, A:S.207
EDO.4: 7 residues within 4Å:- Chain A: G.226, K.227, L.228, K.229
- Chain B: Q.224, A.225, G.226
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:L.228, A:K.229, B:A.225
- Water bridges: A:E.230
EDO.5: 3 residues within 4Å:- Chain A: K.2, D.101, Y.132
2 PLIP interactions:2 interactions with chain A- Water bridges: A:K.2, A:K.2
EDO.7: 5 residues within 4Å:- Chain B: F.189, D.190, E.191, L.246, L.250
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.190, B:D.190
- Water bridges: B:S.207, B:S.207
EDO.8: 4 residues within 4Å:- Chain B: V.160, L.161, N.182, H.183
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.182
EDO.10: 8 residues within 4Å:- Chain C: T.107, Y.136, S.137, I.138, P.139, T.142, V.144, I.146
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:I.138, C:I.138, C:T.142
- Water bridges: C:S.137
EDO.11: 8 residues within 4Å:- Chain C: G.188, F.189, D.190, E.191, S.207, I.242, L.246, L.250
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.190, C:D.190
- Water bridges: C:S.207
EDO.13: 8 residues within 4Å:- Chain D: T.107, Y.136, S.137, I.138, P.139, T.142, V.144, I.146
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:T.107, D:Y.136, D:I.138
EDO.14: 5 residues within 4Å:- Chain D: D.190, E.191, I.242, L.246, L.250
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:D.190, D:D.190
- Water bridges: D:S.207, D:S.207
EDO.15: 3 residues within 4Å:- Chain D: L.161, N.182, H.183
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:L.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huynh, N. et al., Structural Basis for Substrate Specificity and Mechanism of N-Acetyl-d-neuraminic Acid Lyase from Pasteurella multocida. Biochemistry (2013)
- Release Date
- 2013-11-06
- Peptides
- N-acetylneuraminate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huynh, N. et al., Structural Basis for Substrate Specificity and Mechanism of N-Acetyl-d-neuraminic Acid Lyase from Pasteurella multocida. Biochemistry (2013)
- Release Date
- 2013-11-06
- Peptides
- N-acetylneuraminate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D