SMTL ID : 4ime.2 (1 other biounit)

Crystal Structure of Pasteurella multocida N-Acetyl-D-Neuraminic acid lyase K164A Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

3 x ME2: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE(Non-covalent)

ME2.1: 10 residues within 4Å: Chain A: K.112, F.140, L.141, T.142, G.143 Chain B: K.112, P.139, F.140, L.141, G.143 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.112, B:K.112 ME2.2: 7 residues within 4Å: Chain A: K.93 Chain D: N.16, D.18, S.20, I.21, E.58, R.269 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:S.20 Hydrophobic interactions: A:K.93 ME2.3: 10 residues within 4Å: Chain C: K.112, P.139, F.140, L.141, T.142, G.143 Chain D: F.140, L.141, T.142, G.143 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.112, C:G.143 Water bridges: C:Y.110

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.4: 5 residues within 4Å: Chain C: L.246, A.247, N.248, K.280, F.283 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huynh, N. et al., Structural Basis for Substrate Specificity and Mechanism of N-Acetyl-d-neuraminic Acid Lyase from Pasteurella multocida. Biochemistry (2013)

Release Date

2013-11-06

Peptides

N-acetylneuraminate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

N-acetylneuraminate lyase

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