SMTL ID : 4imr.1

Crystal structure of 3-oxoacyl (acyl-carrier-protein) reductase (target EFI-506442) from agrobacterium tumefaciens C58 with NADP bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 28 residues within 4Å: Chain A: G.40, S.41, S.42, R.43, G.44, I.45, H.63, G.64, V.65, S.69, G.89, D.90, L.91, N.116, A.117, S.118, V.139, I.166, G.167, S.168, Y.181, K.185, P.211, G.212, L.213, V.214, T.216, R.218 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:P.211 Hydrogen bonds: A:G.40, A:S.42, A:S.42, A:R.43, A:I.45, A:V.65, A:K.66, A:S.69, A:S.69, A:D.90, A:L.91, A:N.116, A:S.118, A:S.118, A:Y.181, A:K.185, A:V.214, A:V.214, A:R.218 Water bridges: A:G.46, A:N.116, A:D.217 Salt bridges: A:R.43, A:R.43, A:R.218, A:R.218 NAP.2: 29 residues within 4Å: Chain B: G.40, S.41, S.42, R.43, G.44, I.45, H.63, G.64, V.65, S.69, G.89, D.90, L.91, N.116, A.117, S.118, V.139, I.166, G.167, S.168, Y.181, K.185, P.211, G.212, L.213, V.214, T.216, R.218 Ligands: UNL.3 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:P.211 Hydrogen bonds: B:G.40, B:S.42, B:S.42, B:I.45, B:V.65, B:S.69, B:S.69, B:D.90, B:L.91, B:N.116, B:S.118, B:S.118, B:K.185, B:V.214, B:V.214, B:T.216, B:D.217, B:R.218 Water bridges: B:R.43, B:G.46, B:K.66, B:N.116 Salt bridges: B:R.43, B:R.43, B:R.218, B:R.218 NAP.4: 28 residues within 4Å: Chain C: G.40, S.41, S.42, R.43, G.44, I.45, H.63, G.64, V.65, S.69, G.89, D.90, L.91, N.116, A.117, S.118, V.139, I.166, G.167, S.168, Y.181, K.185, P.211, G.212, L.213, V.214, T.216, R.218 27 PLIP interactions: 27 interactions with chain C Hydrophobic interactions: C:P.211 Hydrogen bonds: C:G.40, C:S.42, C:S.42, C:R.43, C:I.45, C:V.65, C:K.66, C:S.69, C:S.69, C:D.90, C:L.91, C:N.116, C:S.118, C:S.118, C:K.185, C:V.214, C:V.214, C:T.216, C:R.218 Water bridges: C:G.46, C:G.46, C:D.217 Salt bridges: C:R.43, C:R.43, C:R.218, C:R.218 NAP.5: 29 residues within 4Å: Chain D: G.40, S.41, S.42, R.43, G.44, I.45, H.63, G.64, V.65, S.69, G.89, D.90, L.91, N.116, A.117, S.118, V.139, I.166, G.167, S.168, Y.181, K.185, P.211, G.212, L.213, V.214, T.216, R.218 Ligands: UNL.6 28 PLIP interactions: 28 interactions with chain D Hydrophobic interactions: D:P.211 Hydrogen bonds: D:G.40, D:S.42, D:S.42, D:I.45, D:V.65, D:S.69, D:S.69, D:D.90, D:D.90, D:L.91, D:N.116, D:S.118, D:S.118, D:Y.181, D:K.185, D:V.214, D:V.214, D:D.217, D:R.218 Water bridges: D:R.43, D:G.46, D:K.66, D:N.116 Salt bridges: D:R.43, D:R.43, D:R.218, D:R.218

2 x UNL: UNKNOWN LIGAND

UNL.3: 9 residues within 4Å: Chain B: Q.120, S.168, I.169, N.170, Y.181, G.212, L.213, Y.233 Ligands: NAP.2 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.169, B:L.213, B:L.213 Hydrogen bonds: B:Q.120, B:S.168, B:S.168, B:N.170, B:Y.181 UNL.6: 9 residues within 4Å: Chain D: Q.120, S.168, I.169, N.170, Y.181, G.212, L.213, Y.233 Ligands: NAP.5 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:I.169, D:L.213, D:L.213 Hydrogen bonds: D:Q.120, D:S.168, D:S.168, D:N.170

Links

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Citation

Patskovsky, Y. et al., Crystal Structure of 3-Oxoacyl (Acyl-Carrier-Protein) Reductase Atu5465 from Agrobacterium Tumefaciens. To be Published

Release Date

2013-01-16

Peptides

3-oxoacyl-(Acyl-carrier-protein) reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

3-oxoacyl-(Acyl-carrier-protein) reductase