SMTL ID : 4inj.1

Crystal structure of the S111A mutant of member of MccF clade from Listeria monocytogenes EGD-e with product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x LMS: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDRO-2-FURANYL]METHYL SULFAMATE(Non-covalent)

LMS.1: 13 residues within 4Å: Chain A: R.22, I.26, M.27, Q.31, I.86, G.87, G.88, F.113, A.114, H.136, Y.177, H.299 Ligands: GOL.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:I.26, A:Q.31, A:G.87 Water bridges: A:A.28, A:G.88, A:G.88 Salt bridges: A:R.22, A:H.136, A:H.299 pi-Stacking: A:Y.177, A:Y.177 LMS.4: 13 residues within 4Å: Chain B: R.22, I.26, Q.31, I.86, G.87, G.88, F.113, A.114, H.136, W.176, Y.177, H.299 Ligands: GOL.9 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:I.26, B:Q.31, B:G.87, B:H.299 Water bridges: B:A.28, B:G.88, B:G.88, B:H.136, B:H.299 Salt bridges: B:R.22, B:H.136, B:H.299 pi-Stacking: B:Y.177, B:Y.177

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: F.113, S.139, W.176, G.298, H.299, T.300, Q.301, I.303 Ligands: LMS.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.139, A:T.300, A:Q.301 GOL.6: 5 residues within 4Å: Chain A: E.274, Y.278 Chain B: D.56, C.57 Ligands: PEG.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:C.57 GOL.7: 7 residues within 4Å: Chain B: D.147, Y.148, E.151, K.166, S.168, A.169 Ligands: GOL.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.147, B:K.166, B:K.166, B:A.169 GOL.8: 7 residues within 4Å: Chain B: G.145, D.147, A.169, T.170, F.185, P.302 Ligands: GOL.7 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.145, B:A.169, B:T.170, B:T.170 Water bridges: B:R.183 GOL.9: 7 residues within 4Å: Chain B: F.113, S.139, W.176, T.300, Q.301, I.303 Ligands: LMS.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.139, B:T.300, B:Q.301 Water bridges: B:H.136

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain B: E.54, S.61, S.62, S.65 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.54, B:S.62, B:S.65, B:S.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of the S111A mutant of member of MccF clade from Listeria monocytogenes EGD-e with product. To be Published

Release Date

2013-02-20

Peptides

Lmo1638 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lmo1638 protein