SMTL ID : 4ip9.1

Structure of native human serum amyloid A1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

18 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)

P4C.1: 4 residues within 4Å: Chain A: R.22, W.25 Chain C: F.18, R.22 Ligand excluded by PLIP P4C.2: 7 residues within 4Å: Chain A: R.8, F.11, S.12, L.14 Chain E: W.25, R.32 Ligands: P4C.16 Ligand excluded by PLIP P4C.3: 5 residues within 4Å: Chain A: A.21, W.25, I.65 Ligands: P4C.4, P4C.6 Ligand excluded by PLIP P4C.4: 12 residues within 4Å: Chain A: W.60, A.64, I.65, A.68, R.69, I.72, Q.73 Chain B: A.68 Chain C: F.11 Chain F: F.11 Ligands: P4C.3, P4C.8 Ligand excluded by PLIP P4C.5: 8 residues within 4Å: Chain B: R.8, F.11, S.12, G.15 Chain D: W.25, Y.28, R.32, Q.73 Ligand excluded by PLIP P4C.6: 8 residues within 4Å: Chain B: A.21, R.22, W.25 Chain F: F.18, R.22 Ligands: P4C.3, P4C.12, P4C.18 Ligand excluded by PLIP P4C.7: 4 residues within 4Å: Chain C: R.22, W.25 Chain E: F.18, R.22 Ligand excluded by PLIP P4C.8: 7 residues within 4Å: Chain A: W.25, R.32 Chain C: R.8, F.11, S.12, L.14 Ligands: P4C.4 Ligand excluded by PLIP P4C.9: 5 residues within 4Å: Chain C: A.21, W.25, I.65 Ligands: P4C.10, P4C.12 Ligand excluded by PLIP P4C.10: 12 residues within 4Å: Chain B: F.11 Chain C: W.60, A.64, I.65, A.68, R.69, I.72, Q.73 Chain D: A.68 Chain E: F.11 Ligands: P4C.9, P4C.14 Ligand excluded by PLIP P4C.11: 8 residues within 4Å: Chain D: R.8, F.11, S.12, G.15 Chain F: W.25, Y.28, R.32, Q.73 Ligand excluded by PLIP P4C.12: 8 residues within 4Å: Chain B: F.18, R.22 Chain D: A.21, R.22, W.25 Ligands: P4C.6, P4C.9, P4C.18 Ligand excluded by PLIP P4C.13: 4 residues within 4Å: Chain A: F.18, R.22 Chain E: R.22, W.25 Ligand excluded by PLIP P4C.14: 7 residues within 4Å: Chain C: W.25, R.32 Chain E: R.8, F.11, S.12, L.14 Ligands: P4C.10 Ligand excluded by PLIP P4C.15: 5 residues within 4Å: Chain E: A.21, W.25, I.65 Ligands: P4C.16, P4C.18 Ligand excluded by PLIP P4C.16: 12 residues within 4Å: Chain A: F.11 Chain D: F.11 Chain E: W.60, A.64, I.65, A.68, R.69, I.72, Q.73 Chain F: A.68 Ligands: P4C.2, P4C.15 Ligand excluded by PLIP P4C.17: 8 residues within 4Å: Chain B: W.25, Y.28, R.32, Q.73 Chain F: R.8, F.11, S.12, G.15 Ligand excluded by PLIP P4C.18: 8 residues within 4Å: Chain D: F.18, R.22 Chain F: A.21, R.22, W.25 Ligands: P4C.6, P4C.12, P4C.15 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J. et al., Structural mechanism of serum amyloid A-mediated inflammatory amyloidosis. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-03-26

Peptides

Serum amyloid A-1 protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Serum amyloid A-1 protein