SMTL ID : 4iqj.1

Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-4-4-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain I: H.47, E.72, H.95, C.145, D.212 Ligands: ZN.3 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.72, I:H.95, I:C.145 ZN.2: 3 residues within 4Å: Chain I: D.20, H.47, H.214 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:D.20, I:H.47, I:H.214 ZN.3: 5 residues within 4Å: Chain I: H.11, H.13, E.72, D.212 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:H.11, I:H.13, I:E.72, I:E.72, I:D.212 ZN.5: 6 residues within 4Å: Chain J: H.47, E.72, H.95, C.145, D.212 Ligands: ZN.7 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.72, J:H.95, J:C.145 ZN.6: 3 residues within 4Å: Chain J: D.20, H.47, H.214 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:D.20, J:H.47, J:H.214 ZN.7: 5 residues within 4Å: Chain J: H.11, H.13, E.72, D.212 Ligands: ZN.5 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:H.11, J:H.13, J:E.72, J:D.212, J:D.212 ZN.9: 6 residues within 4Å: Chain K: H.47, E.72, H.95, C.145, D.212 Ligands: ZN.11 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.72, K:H.95, K:C.145 ZN.10: 3 residues within 4Å: Chain K: D.20, H.47, H.214 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:D.20, K:H.47, K:H.214 ZN.11: 6 residues within 4Å: Chain K: H.11, H.13, H.47, E.72, D.212 Ligands: ZN.9 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.11, K:H.13, K:E.72, K:D.212 ZN.13: 5 residues within 4Å: Chain L: E.72, H.95, C.145, D.212 Ligands: ZN.15 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.72, L:H.95, L:C.145 ZN.14: 3 residues within 4Å: Chain L: D.20, H.47, H.214 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:D.20, L:H.47, L:H.214 ZN.15: 5 residues within 4Å: Chain L: H.11, H.13, E.72, D.212 Ligands: ZN.13 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:H.11, L:H.13, L:H.13, L:E.72, L:D.212

4 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain I: D.463, D.465, K.616, D.618 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:D.463, I:D.463, I:D.465, I:D.618 MG.8: 6 residues within 4Å: Chain J: D.463, I.464, D.465, K.616, M.617, D.618 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.463, J:D.463, J:D.465, J:D.618 MG.12: 4 residues within 4Å: Chain K: D.463, D.465, K.616, D.618 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:D.463, K:D.465, K:D.465, K:D.618 MG.16: 6 residues within 4Å: Chain L: D.463, I.464, D.465, K.616, M.617, D.618 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:D.463, L:D.465, L:D.618

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome. Structure (2013)

Release Date

2013-03-13

Peptides

DNA polymerase III subunit alpha: IJKL
DNA polymerase III subunit gamma/tau: MNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

I
A

J
B

K
C

L
D

M
M

N
N

O
O

P
P

DNA polymerase III subunit alpha

DNA polymerase III subunit gamma/tau

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