SMTL ID : 4iqx.1

Mutant P44S P169S M296I of Foot-and-mouth disease Virus RNA-dependent RNA polymerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x A- U- G- G- G- C- C: RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3')(Non-covalent)

A-U-G-G-G-C-C.1: 34 residues within 4Å: Chain A: M.16, K.20, G.107, L.108, D.109, E.112, T.115, A.116, R.128, F.162, K.164, D.165, V.181, V.183, I.189, R.193, H.204, V.215, G.216, C.217, N.218, S.298, G.299, C.300, S.301, A.302, S.304, Y.336, R.416 Ligands: G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2, G-G-C-C-C.2 Protein-ligand interaction information (PLIP) not available

1 x G- G- C- C- C: RNA (5'-R(*GP*GP*CP*CP*C)-3')(Non-covalent)

G-G-C-C-C.2: 23 residues within 4Å: Chain A: K.164, S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, M.403, I.411, R.416, T.419, E.422, K.423, S.426, V.427, L.430 Ligands: A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agudo, R. et al., A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape. Plos Pathog. (2010)

Release Date

2013-02-06

Peptides

3D polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3D polymerase