SMTL ID : 4iqy.2 (1 other biounit)

Crystal structure of the human protein-proximal ADP-ribosyl-hydrolase MacroD2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 23 residues within 4Å: Chain A: G.74, D.75, I.76, A.87, N.89, G.94, G.95, G.96, G.97, V.98, D.99, C.101, C.181, I.182, S.183, T.184, G.185, I.186, Y.187, C.219, F.221, L.222, D.225 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:D.75, A:I.76, A:N.89, A:G.96, A:V.98, A:D.99, A:D.99, A:S.183, A:G.185, A:I.186, A:Y.187, A:D.225 Water bridges: A:G.96, A:G.96, A:D.99, A:C.181, A:C.181, A:L.222 pi-Stacking: A:F.221, A:F.221

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: E.212 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.212, H2O.3, H2O.3, H2O.4, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jankevicius, G. et al., A family of macrodomain proteins reverses cellular mono-ADP-ribosylation. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-03-06

Peptides

O-acetyl-ADP-ribose deacetylase MACROD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

O-acetyl-ADP-ribose deacetylase MACROD2

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