SMTL ID : 4ir7.1

Crystal Structure of Mtb FadD10 in Complex with Dodecanoyl-AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x 1ZZ: 5'-O-[(S)-(dodecanoyloxy)(hydroxy)phosphoryl]adenosine(Non-covalent)

1ZZ.1: 22 residues within 4Å: Chain A: L.222, H.226, I.227, W.232, C.266, L.267, G.293, Y.294, G.295, G.296, S.297, R.298, Q.316, V.317, Y.318, G.319, L.320, S.321, V.345, D.409, I.421 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.222, A:I.227, A:W.232 Hydrogen bonds: A:G.296, A:Q.316, A:V.317, A:G.319, A:S.321, A:S.321, A:D.409 Water bridges: A:T.407, A:D.409 Salt bridges: A:H.226 1ZZ.3: 22 residues within 4Å: Chain B: L.222, H.226, I.227, W.232, C.266, L.267, G.293, Y.294, G.295, G.296, S.297, R.298, Q.316, V.317, Y.318, G.319, L.320, S.321, V.345, D.409, I.421 Ligands: MG.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.222, B:I.227, B:W.232 Hydrogen bonds: B:G.296, B:Q.316, B:V.317, B:G.319, B:S.321, B:S.321, B:D.409 Water bridges: B:T.407, B:D.409 Salt bridges: B:H.226

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: G.296 Ligands: 1ZZ.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: G.296 Ligands: 1ZZ.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Structures of Mycobacterium tuberculosis FadD10 protein reveal a new type of adenylate-forming enzyme. J.Biol.Chem. (2013)

Release Date

2013-05-08

Peptides

Long chain fatty acid CoA ligase FadD10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Long chain fatty acid CoA ligase FadD10

Related Entries With Identical Sequence