SMTL ID : 4irp.2 (2 other biounits)

Crystal structure of catalytic domain of human beta1,4-galactosyltransferase-7 in open conformation with manganses and UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 10 residues within 4Å: Chain A: P.24, F.25, R.26, R.28, F.63, D.87, V.88, D.89, Y.118 Ligands: MN.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.63 Hydrogen bonds: A:P.24, A:R.26, A:R.26, A:R.28, A:D.87, A:V.88, A:D.89, A:D.89, A:Y.118

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain A: D.89, H.181 Ligands: UDP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.89, A:D.89, A:H.181, H2O.6

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 2 residues within 4Å: Chain A: P.16, S.79 No protein-ligand interaction detected (PLIP) ACT.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsutsui, Y. et al., Crystal Structures of beta-1,4-Galactosyltransferase 7 Enzyme Reveal Conformational Changes and Substrate Binding. J.Biol.Chem. (2013)

Release Date

2013-09-25

Peptides

Beta-1,4-galactosyltransferase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-1,4-galactosyltransferase 7

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