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SMTL ID : 4ivg.1
(1 other biounit)
Crystal structure of mitochondrial Hsp90 (TRAP1) NTD-Middle domain dimer with AMPPNP
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.75 Å
Oligo State
homo-dimer
Ligands
2 x
ANP
:
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
(Non-covalent)
ANP.1:
21 residues within 4Å:
Chain A:
E.58
,
N.62
,
A.66
,
K.69
,
D.101
,
M.106
,
N.114
,
L.115
,
R.120
,
S.121
,
G.122
,
G.142
,
Q.143
,
F.144
,
G.145
,
V.146
,
G.147
,
F.148
,
T.194
,
R.345
Ligands:
MG.3
25
PLIP interactions
:
25 interactions with chain A
Hydrogen bonds:
A:E.58
,
A:N.62
,
A:K.69
,
A:D.101
,
A:S.121
,
A:S.121
,
A:G.122
,
A:Q.143
,
A:F.144
,
A:G.145
,
A:V.146
,
A:V.146
,
A:G.147
,
A:F.148
,
A:R.345
,
A:R.345
Water bridges:
A:E.58
,
A:E.58
,
A:N.62
,
A:D.65
,
A:A.66
,
A:K.69
,
A:D.101
,
A:G.105
,
A:T.194
ANP.4:
21 residues within 4Å:
Chain B:
E.58
,
N.62
,
A.66
,
K.69
,
D.101
,
M.106
,
N.114
,
L.115
,
R.120
,
S.121
,
G.122
,
G.142
,
Q.143
,
F.144
,
G.145
,
V.146
,
G.147
,
F.148
,
T.194
,
R.345
Ligands:
MG.6
25
PLIP interactions
:
25 interactions with chain B
Hydrogen bonds:
B:E.58
,
B:N.62
,
B:K.69
,
B:D.101
,
B:S.121
,
B:S.121
,
B:G.122
,
B:Q.143
,
B:F.144
,
B:G.145
,
B:V.146
,
B:V.146
,
B:G.147
,
B:F.148
,
B:R.345
,
B:R.345
Water bridges:
B:E.58
,
B:E.58
,
B:N.62
,
B:D.65
,
B:A.66
,
B:K.69
,
B:D.101
,
B:G.105
,
B:T.194
2 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.2:
3 residues within 4Å:
Chain A:
Y.274
,
R.364
,
R.367
4
PLIP interactions
:
4 interactions with chain A
Water bridges:
A:Y.274
,
A:R.364
Salt bridges:
A:R.364
,
A:R.367
PO4.5:
3 residues within 4Å:
Chain B:
Y.274
,
R.364
,
R.367
4
PLIP interactions
:
4 interactions with chain B
Water bridges:
B:Y.274
,
B:R.364
Salt bridges:
B:R.364
,
B:R.367
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.3:
2 residues within 4Å:
Chain A:
N.62
Ligands:
ANP.1
No protein-ligand interaction detected (PLIP)
MG.6:
2 residues within 4Å:
Chain B:
N.62
Ligands:
ANP.4
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Lavery, L.A. et al., Structural asymmetry in the closed state of mitochondrial Hsp90 (TRAP1) supports a two-step ATP hydrolysis mechanism. Mol.Cell (2014)
Release Date
2014-01-22
Peptides
TNF receptor-associated protein 1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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TNF receptor-associated protein 1
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