SMTL ID : 4iwv.1

Crystals structure of Human Glucokinase in complex with small molecule activator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: M.229, V.232, V.235, G.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.237 Water bridges: A:D.238

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.2: 15 residues within 4Å: Chain A: S.142, F.143, P.144, T.159, K.160, N.195, D.196, T.197, I.216, G.220, C.221, N.222, E.247, Q.278, E.281 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.159, A:T.159, A:K.160, A:N.195, A:N.195, A:C.221, A:N.222, A:E.247, A:Q.278 Water bridges: A:G.220, A:C.221, A:E.247 Salt bridges: A:K.160

1 x 1J9: (2S)-2-{[1-(2-chlorophenyl)-1H-pyrazolo[3,4-d]pyrimidin-4-yl]oxy}-N-(5-chloropyridin-2-yl)-3-(2-hydroxyethoxy)propanamide(Non-covalent)

1J9.3: 20 residues within 4Å: Chain A: Y.52, V.53, R.54, T.56, P.57, E.58, G.59, S.60, W.90, I.150, M.201, I.202, Y.205, Y.206, M.226, L.442, V.443, V.446, A.447, K.450 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.205, A:V.443, A:V.446 Hydrogen bonds: A:R.54, A:R.54, A:G.59, A:K.450 Water bridges: A:T.56, A:E.212 pi-Stacking: A:W.90, A:W.90, A:Y.206 pi-Cation interactions: A:K.450 Halogen bonds: A:L.442

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waring, M.J. et al., Optimising pharmacokinetics of glucokinase activators with matched triplicate design sets the discovery of AZD3651 and AZD9485. To be Published

Release Date

2013-04-24

Peptides

Glucokinase isoform 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase isoform 3

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