SMTL ID : 4ix9.2 (3 other biounits)

Crystal structure of subunit F of V-ATPase from S. cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: Q.41, E.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.41, A:E.42 GOL.2: 7 residues within 4Å: Chain A: L.7, I.8, G.24, I.25, G.26, Q.27, N.36 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.8, A:I.8, A:G.26, A:Q.27 Water bridges: A:T.6 GOL.3: 7 residues within 4Å: Chain A: K.47, E.75, N.76, I.77, R.78, A.79, R.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.76, A:R.78, A:A.79, A:R.80 GOL.5: 4 residues within 4Å: Chain A: D.13, T.16, N.70, H.72 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.16 Water bridges: A:N.70, A:N.70, A:I.94, A:I.94, A:I.94

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 5 residues within 4Å: Chain A: Y.40, E.42, H.72, E.75, N.76 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.42, A:H.72, A:N.76 Water bridges: A:Y.40, A:E.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basak, S. et al., Crystal and NMR structures give insights into the role and dynamics of subunit F of the eukaryotic V-ATPase from Saccharomyces cerevisiae. J.Biol.Chem. (2013)

Release Date

2013-03-20

Peptides

V-type proton ATPase subunit F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

V-type proton ATPase subunit F

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