SMTL ID : 4ixc.1

Crystal structure of Human Glucokinase in complex with a small molecule activator.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: M.229, V.232, V.235, G.237 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.235

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.2: 15 residues within 4Å: Chain A: S.142, F.143, P.144, T.159, K.160, N.195, D.196, T.197, I.216, G.220, C.221, N.222, E.247, Q.278, E.281 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.159, A:K.160, A:N.195, A:N.195, A:C.221, A:N.222, A:E.247, A:E.247, A:Q.278 Water bridges: A:K.160, A:G.220 Salt bridges: A:K.160

1 x 1JD: (2S)-2-{[1-(3-chloropyridin-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-yl]oxy}-N-(5-methylpyridin-2-yl)-3-(propan-2-yloxy)propanamide(Non-covalent)

1JD.3: 19 residues within 4Å: Chain A: Y.52, V.53, R.54, T.56, P.57, E.58, G.59, S.60, W.90, I.150, M.201, I.202, Y.205, Y.206, M.226, L.442, V.443, V.446, A.447 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.90, A:I.150, A:Y.205, A:Y.205, A:Y.205, A:V.443, A:V.446 Hydrogen bonds: A:R.54, A:R.54, A:G.59 Water bridges: A:T.56 pi-Stacking: A:W.90, A:W.90, A:Y.206 pi-Cation interactions: A:K.450 Halogen bonds: A:L.442

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waring, M.J. et al., Matched triplicate design sets in the optimisation of glucokinase activators maximising medicinal chemistry information content. To be Published

Release Date

2013-04-24

Peptides

Glucokinase isoform 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase isoform 3

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