SMTL ID : 4ixs.1

Native structure of xometc at ph 5.2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: A.267, N.271, I.379, E.380, D.381, L.382 Chain B: L.263, R.266 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.266, B:R.266, A:N.271, A:L.382 Water bridges: A:E.270 GOL.3: 8 residues within 4Å: Chain C: A.267, N.271, I.379, E.380, D.381, L.382 Chain D: L.263, R.266 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:N.271, C:D.381, C:L.382, D:R.266, D:R.266 Water bridges: C:E.270

2 x CO3: CARBONATE ION(Non-functional Binders)

CO3.2: 8 residues within 4Å: Chain B: Y.112, N.160, K.210, E.338, S.339, L.340, T.354, R.374 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.160, B:T.354, B:R.374, B:R.374 CO3.4: 8 residues within 4Å: Chain D: Y.112, N.160, K.210, E.338, S.339, L.340, T.354, R.374 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.160, D:R.374, D:R.374

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ngo, H.P. et al., PLP undergoes conformational changes during the course of an enzymatic reaction. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-01-29

Peptides

Cystathionine gamma-lyase-like protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Cystathionine gamma-lyase-like protein

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