SMTL ID : 4ixx.1

Crystal structure of S213G variant DAH7PS without Tyr bound from Neisseria meningitidis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: C.63, K.99, H.270, E.304, D.324 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:H.270, A:E.304, A:D.324 MN.4: 6 residues within 4Å: Chain B: C.63, R.94, K.99, H.270, E.304, D.324 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.63, B:H.270, B:E.304, B:D.324 MN.6: 5 residues within 4Å: Chain C: C.63, K.99, H.270, E.304, D.324 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.63, C:H.270, C:E.304, C:D.324 MN.9: 5 residues within 4Å: Chain D: C.63, K.99, H.270, E.304, D.324 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.63, D:H.270, D:E.304, D:D.324

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.100, R.101, T.102 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.102, A:T.102 Salt bridges: A:R.101 SO4.3: 6 residues within 4Å: Chain A: G.165, A.166, R.167, K.188, R.236, H.270 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.166 Water bridges: A:R.167 Salt bridges: A:R.167, A:K.188, A:R.236, A:H.270 SO4.5: 6 residues within 4Å: Chain B: A.166, R.167, K.188, R.236, D.267, H.270 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.166 Salt bridges: B:R.167, B:K.188, B:R.236, B:H.270 SO4.7: 2 residues within 4Å: Chain C: R.101, T.102 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.102 Salt bridges: C:R.101 SO4.8: 5 residues within 4Å: Chain C: A.166, K.188, R.236, D.267, H.270 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.166, C:R.167 Salt bridges: C:K.188, C:R.236, C:H.270 SO4.10: 2 residues within 4Å: Chain D: R.101, T.102 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.102 Water bridges: D:T.103, D:T.103 Salt bridges: D:R.101 SO4.11: 5 residues within 4Å: Chain D: A.166, R.167, K.188, R.236, H.270 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:A.166 Water bridges: D:K.99 Salt bridges: D:R.167, D:K.188, D:R.236, D:H.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cross, P.J. et al., Neisseria meningitidis expresses a single 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase that is inhibited primarily by phenylalanine. Protein Sci. (2013)

Release Date

2013-12-11

Peptides

3-deoxy-D-arabino-heptulosonate 7-phosphate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-deoxy-D-arabino-heptulosonate 7-phosphate synthase

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