SMTL ID : 4ixz.1

Native structure of cystathionine gamma lyase (XometC) from xanthomonas oryzae pv. oryzae at pH 9.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-tetramer

Ligands

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.1: 7 residues within 4Å: Chain A: Y.112, N.160, K.210, S.339, L.340, T.354, R.374 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.160, A:S.339, A:R.374, A:R.374

3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 6 residues within 4Å: Chain A: L.193, M.265, R.266, C.269, S.307, G.308 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.266 BME.3: 6 residues within 4Å: Chain B: L.193, M.265, R.266, C.269, G.308, F.309 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.266 BME.4: 6 residues within 4Å: Chain C: L.193, M.265, R.266, C.269, G.308, F.309 1 PLIP interactions: 1 interactions with chain C Water bridges: C:R.266

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain D: A.294, S.295, H.296, P.297 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.295, D:H.296 Water bridges: D:H.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ngo, H.P. et al., PLP undergoes conformational changes during the course of an enzymatic reaction. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-01-29

Peptides

Cystathionine gamma-lyase-like protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cystathionine gamma-lyase-like protein

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