SMTL ID : 4iya.1

Structure of the Y250A mutant of the PANTON-VALENTINE LEUCOCIDIN S component from STAPHYLOCOCCUS AUREUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

2 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 5 residues within 4Å: Chain A: K.32, W.33, K.65, R.81, R.271 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.33 Hydrogen bonds: A:K.65 Water bridges: A:K.32, A:K.65, A:R.81, A:R.81, A:R.81 Salt bridges: A:K.32, A:K.65, A:R.81, A:R.271 FLC.2: 6 residues within 4Å: Chain A: Y.69, Y.71, K.72, V.244, H.246, I.264 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.246

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: K.48, Y.49, N.50, G.122 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.50, A:N.50 Water bridges: A:N.50, A:N.50, A:G.122, A:N.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laventie, B.J. et al., Residues essential for panton-valentine leukocidin s component binding to its cell receptor suggest both plasticity and adaptability in its interaction surface. Plos One (2014)

Release Date

2014-01-29

Peptides

LukS-PV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LukS-PV