SMTL ID : 4j12.2 (1 other biounit)

monomeric Fc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG.1: 9 residues within 4Å: Chain A: F.7, F.9, K.12, T.26, V.30, D.31, Q.61, N.63, R.67 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.67, A:K.12, A:K.12, A:R.67 Water bridges: A:T.26, A:R.67 NAG-NAG-BMA-MAN-NAG-MAN-NAG.3: 9 residues within 4Å: Chain B: F.7, F.9, K.12, T.26, V.30, D.31, Q.61, N.63, R.67 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.67, B:K.12, B:K.12, B:R.67 Water bridges: B:T.26, B:R.67

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: Q.128, N.130, T.175, T.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.177 NAG.4: 4 residues within 4Å: Chain B: Q.128, N.130, T.175, T.177 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishino, T. et al., Engineering a Monomeric Fc Domain Modality by N-Glycosylation for the Half-life Extension of Biotherapeutics. J.Biol.Chem. (2013)

Release Date

2013-05-01

Peptides

human Fc fragment: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

human Fc fragment

Related Entries With Identical Sequence