SMTL ID : 4j2n.1

Crystal Structure of mycobacteriophage Pukovnik Xis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-pentamer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.8, L.41, R.43 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.8 Water bridges: A:S.8, A:I.9, A:I.9, A:I.42, A:R.43 Salt bridges: A:R.43 SO4.2: 5 residues within 4Å: Chain B: R.36, P.39, R.40 Chain C: R.24 Chain D: R.54 6 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D, 2 interactions with chain C Hydrogen bonds: B:R.40 Salt bridges: B:R.36, B:R.40, D:R.54, C:R.24 Water bridges: C:R.24 SO4.3: 3 residues within 4Å: Chain B: L.41, R.43 Chain C: S.8 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Water bridges: C:S.8, C:S.8, C:S.8, C:I.9, B:R.43 Salt bridges: B:R.43 SO4.4: 4 residues within 4Å: Chain B: R.24 Chain C: R.36, P.39, R.40 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.40 Salt bridges: C:R.36, C:R.40, B:R.24 SO4.5: 4 residues within 4Å: Chain B: S.8 Chain C: L.41, I.42, R.43 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:I.42 Water bridges: C:R.43, B:I.9, B:I.9 Salt bridges: C:R.43 SO4.6: 3 residues within 4Å: Chain D: S.8, L.41, R.43 6 PLIP interactions: 6 interactions with chain D Water bridges: D:S.8, D:S.8, D:I.9, D:I.42, D:R.43 Salt bridges: D:R.43 SO4.7: 4 residues within 4Å: Chain D: R.36, G.38, P.39, R.40 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.36, D:R.40 SO4.8: 3 residues within 4Å: Chain E: S.8, L.41, R.43 6 PLIP interactions: 6 interactions with chain E Water bridges: E:S.8, E:I.9, E:I.9, E:I.42, E:R.43 Salt bridges: E:R.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, S. et al., The Structure of Xis Reveals the Basis for Filament Formation and Insight into DNA Bending within a Mycobacteriophage Intasome. J.Mol.Biol. (2014)

Release Date

2013-10-23

Peptides

Gp37: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

E
E

Gp37