SMTL ID : 4j3e.1

The 1.9A crystal structure of humanized Xenopus Mdm2 with nutlin-3a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x NUT: 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one(Non-covalent)

NUT.1: 13 residues within 4Å: Chain A: L.31, L.34, G.35, Q.36, I.38, M.39, Q.49, V.52, F.68, V.70, H.73, I.76, Y.77 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:I.38, A:I.38, A:V.52, A:V.70, A:V.70, A:I.76 Hydrogen bonds: A:Q.36 pi-Stacking: A:H.73 Halogen bonds: A:H.73

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: E.72, H.73, R.74, R.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.73, A:R.74, A:R.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vu, B. et al., Discovery of RG7112: A Small-Molecule MDM2 Inhibitor in Clinical Development. ACS Med Chem Lett (2013)

Release Date

2013-04-24

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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