SMTL ID : 4j3j.1

Crystal Structure of DPP-IV with Compound C3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x D3C: N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-6-(trifluoromethyl)-3,4-dihydropyrrolo[1,2-a]pyrazine-2(1H)-carboxamide(Non-covalent)

D3C.1: 17 residues within 4Å: Chain A: R.87, E.167, E.168, S.171, R.318, F.319, Y.509, Y.547, S.592, Y.593, V.618, W.621, Y.624, Y.628, N.672, V.673, H.702 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.319, A:F.319, A:Y.624, A:V.673 Hydrogen bonds: A:E.168, A:Y.624 pi-Stacking: A:Y.628 Halogen bonds: A:N.672 D3C.2: 17 residues within 4Å: Chain B: R.87, E.167, E.168, S.171, R.318, F.319, Y.509, Y.547, S.592, Y.593, V.618, W.621, Y.624, Y.628, N.672, V.673, H.702 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.319, B:Y.624, B:V.673 Hydrogen bonds: B:E.167, B:E.168 pi-Stacking: B:Y.628

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Design and synthesis of 4-(2,4,5-trifluorophenyl)butane-1,3-diamines as dipeptidyl peptidase IV inhibitors. Chemmedchem (2013)

Release Date

2014-02-05

Peptides

Dipeptidyl peptidase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 4

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