SMTL ID : 4j4v.1

Pentameric SFTSVN with suramin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-pentamer

Ligands

5 x SVR: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFON IC ACID(Non-covalent)

SVR.1: 14 residues within 4Å: Chain A: T.66, R.67, G.68, N.69, K.70, E.97, R.98, A.99, V.108, Q.112, P.130, M.150, F.180, I.184 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.180, A:F.180, A:I.184 Hydrogen bonds: A:L.65, A:N.69, A:E.97, A:A.99, A:Q.112 Water bridges: A:N.69, A:K.70 Salt bridges: A:K.70, A:K.70 SVR.2: 14 residues within 4Å: Chain B: A.64, T.66, R.67, G.68, N.69, K.70, E.97, R.98, A.99, V.108, Q.112, P.130, M.150, F.180 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.180 Hydrogen bonds: B:T.66, B:N.69, B:N.69, B:R.98, B:A.99, B:Q.112 Water bridges: B:K.70, B:K.70 Salt bridges: B:K.70 SVR.3: 12 residues within 4Å: Chain C: T.66, R.67, G.68, N.69, K.70, E.97, R.98, A.99, P.130, M.150, F.180, I.184 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:P.130, C:F.180, C:I.184 Hydrogen bonds: C:T.66, C:N.69, C:N.69, C:R.98, C:A.99 Salt bridges: C:K.70 SVR.4: 13 residues within 4Å: Chain A: K.77 Chain D: T.66, R.67, G.68, N.69, E.97, R.98, A.99, V.108, Q.112, P.130, M.150, F.180 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:F.180, D:F.180 Hydrogen bonds: D:T.66, D:N.69, D:N.69, D:A.99, D:Q.112 Water bridges: D:K.70 Salt bridges: A:K.77 SVR.5: 14 residues within 4Å: Chain D: K.77 Chain E: T.66, R.67, G.68, N.69, E.97, R.98, A.99, V.108, Q.112, P.130, M.150, F.180, I.184 8 PLIP interactions: 7 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:F.180, E:I.184 Hydrogen bonds: E:T.66, E:N.69, E:A.99, E:Q.112 Water bridges: E:N.69 Salt bridges: D:K.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiao, L. et al., Structure of severe Fever with thrombocytopenia syndrome virus nucleocapsid protein in complex with suramin reveals therapeutic potential. J.Virol. (2013)

Release Date

2013-05-22

Peptides

Nucleocapsid protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
D

Nucleocapsid protein

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