SMTL ID : 4j74.1

The 1.2A crystal structure of humanized Xenopus MDM2 with RO0503918 - a nutlin fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

2 x I18: (4S,5R)-4,5-bis(4-chlorophenyl)-2-methyl-4,5-dihydro-1H-imidazole(Non-covalent)

I18.1: 9 residues within 4Å: Chain A: L.31, G.35, I.38, Y.44, F.68, V.70, H.73, I.76, Y.77 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.38, A:V.70, A:V.70, A:I.76 Hydrogen bonds: A:Y.44 Water bridges: A:Y.44 pi-Stacking: A:H.73 Halogen bonds: A:H.73 I18.2: 4 residues within 4Å: Chain A: Q.36, M.39, Y.44, Q.49 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.44 Water bridges: A:G.35, A:Y.44, A:Y.44

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: E.72, H.73, R.74, R.75 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.73, A:R.74, A:R.75 Water bridges: A:K.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fry, D.C. et al., Deconstruction of a nutlin: dissecting the binding determinants of a potent protein-protein interaction inhibitor. ACS Med Chem Lett (2013)

Release Date

2013-08-07

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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