SMTL ID : 4j76.1

Crystal Structure of a parasite tRNA synthetase, ligand-free

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.83, T.84, G.85, Q.206, Q.229, F.237 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.84, A:T.84, A:G.85, A:Q.206, A:Q.229 Water bridges: A:S.240 GOL.2: 4 residues within 4Å: Chain A: N.141, K.161, E.164, F.396 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.161, A:K.161 Water bridges: A:N.137, A:N.141, A:K.161 GOL.3: 3 residues within 4Å: Chain A: E.390, E.391, Y.394 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain A: E.164 Chain B: G.167, Y.168 3 PLIP interactions: 3 interactions with chain B Water bridges: B:Y.165, B:G.167, B:G.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koh, C.Y. et al., Crystal structures of Plasmodium falciparum cytosolic tryptophanyl-tRNA synthetase and its potential as a target for structure-guided drug design. Mol.Biochem.Parasitol. (2013)

Release Date

2013-05-22

Peptides

Tryptophanyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tryptophanyl-tRNA synthetase

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