SMTL ID : 4j79.1

Crystal structure of beta'-COP/PEDVspike complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x GLU- LYS- VAL- HIS- VAL- GLN: Spike glycoprotein(Non-covalent)

GLU-LYS-VAL-HIS-VAL-GLN.1: 14 residues within 4Å: Chain A: R.15, K.17, Y.33, R.59, D.98, Y.99, R.101, D.117, F.142, M.144, L.161, N.188, D.206, R.272 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.99, A:L.161 Hydrogen bonds: A:R.15, A:Y.33, A:R.59, A:R.59, A:D.98, A:R.101, A:R.101, A:D.117, A:R.272, A:R.272 Water bridges: A:R.15, A:K.17, A:K.17, A:K.17, A:N.230 Salt bridges: A:R.15, A:K.17, A:R.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, W. et al., Rules for the recognition of dilysine retrieval motifs by coatomer. Embo J. (2013)

Release Date

2013-03-27

Peptides

Coatomer subunit beta': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coatomer subunit beta'