SMTL ID : 4j7d.1

The 1.25A crystal structure of humanized Xenopus MDM2 with a nutlin fragment, RO5045331

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x I31: (4S,5R)-2-(4-tert-butyl-2-ethoxyphenyl)-4,5-bis(4-chlorophenyl)-4,5-dimethyl-4,5-dihydro-1H-imidazole(Non-covalent)

I31.1: 13 residues within 4Å: Chain A: L.31, L.34, G.35, I.38, M.39, Q.49, H.50, F.63, F.68, V.70, H.73, I.76, Y.77 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:L.34, A:I.38, A:I.38, A:Q.49, A:H.50, A:V.70, A:V.70, A:I.76 pi-Stacking: A:H.73 Halogen bonds: A:H.73

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: T.8, P.9, L.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.8, A:L.10 Water bridges: A:L.11 SO4.3: 3 residues within 4Å: Chain A: K.22, E.23, T.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.23, A:T.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fry, D.C. et al., Deconstruction of a nutlin: dissecting the binding determinants of a potent protein-protein interaction inhibitor. ACS Med Chem Lett (2013)

Release Date

2013-08-07

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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