SMTL ID : 4j7l.1

Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x U- U- U- U- U: RNA (5'-R(P*UP*UP*UP*UP*U)-3')(Non-covalent)

U-U-U-U-U.1: 22 residues within 4Å: Chain A: E.138, R.139, Q.140, L.175, L.178, M.179, G.182, Y.183, E.186, D.230, E.247, L.248, K.249, T.250, K.252, H.266, K.267, K.270, Q.274, R.288 Ligands: MG.3, MG.4 Protein-ligand interaction information (PLIP) not available

1 x UBD: URIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE)(Non-covalent)

UBD.2: 6 residues within 4Å: Chain A: R.24, T.25, Q.26, G.352, G.353, P.354 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.25, A:T.25, A:Q.26, A:Q.26, A:G.352 Water bridges: A:T.25

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain A: E.186, D.230, E.247, L.248 Ligands: U-U-U-U-U.1, MG.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.230, A:E.247, A:L.248, H2O.1 MG.4: 5 residues within 4Å: Chain A: E.186, E.228, D.230 Ligands: U-U-U-U-U.1, MG.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.228, A:D.230, H2O.1, H2O.1, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiao, X. et al., A mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing. Mol.Cell (2013)

Release Date

2013-03-27

Peptides

Protein Dom3Z: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein Dom3Z

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