SMTL ID : 4j8f.1 (1 other biounit)

Crystal structure of a fusion protein containing the NBD of Hsp70 and the middle domain of Hip

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: G.19, T.20, T.21, Y.22, G.208, G.209, G.237, E.238, E.275, K.278, R.279, S.282, G.345, G.346, S.347, R.349, I.350, D.373 Ligands: MG.2, PO4.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.21, A:T.21, A:Y.22, A:G.209, A:E.275, A:K.278, A:R.279, A:S.282, A:G.346, A:R.349 Water bridges: A:E.275, A:E.275 pi-Cation interactions: A:R.279 ADP.21: 20 residues within 4Å: Chain B: G.19, T.20, T.21, Y.22, G.208, G.209, G.237, E.238, E.275, K.278, R.279, S.282, G.345, G.346, S.347, R.349, I.350, D.373 Ligands: MG.22, PO4.23 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:T.21, B:T.21, B:Y.22, B:G.209, B:E.275, B:K.278, B:R.279, B:S.282, B:G.346, B:R.349 Water bridges: B:E.275, B:E.275 pi-Cation interactions: B:R.279

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 2 residues within 4Å: Ligands: ADP.1, PO4.3 No protein-ligand interaction detected (PLIP) MG.22: 2 residues within 4Å: Ligands: ADP.21, PO4.23 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 9 residues within 4Å: Chain A: G.19, T.20, K.78, P.154, E.182, T.211, D.213 Ligands: ADP.1, MG.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.20, A:T.20, A:T.20, A:T.211, A:D.213 Salt bridges: A:K.78 PO4.23: 9 residues within 4Å: Chain B: G.19, T.20, K.78, P.154, E.182, T.211, D.213 Ligands: ADP.21, MG.22 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.20, B:T.20, B:T.20, B:T.211, B:D.213 Salt bridges: B:K.78

34 x IOD: IODIDE ION(Non-functional Binders)

IOD.4: 3 residues within 4Å: Chain A: E.275, R.276, R.279 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: N.64 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: R.540 Ligand excluded by PLIP IOD.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.8: 4 residues within 4Å: Chain A: K.335, A.336, F.361, R.364 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: Q.383, R.555 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain A: I.179 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain A: Q.163 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: K.119, F.121 Ligands: IOD.13 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: R.56 Ligands: IOD.12 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain A: K.253 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain A: I.304, T.305, R.308 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain A: R.349, Q.354, K.368 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain A: K.63, R.268, E.275 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain A: K.550 Ligand excluded by PLIP IOD.19: 2 residues within 4Å: Chain A: V.472, K.503 Ligand excluded by PLIP IOD.20: 3 residues within 4Å: Chain A: I.435, L.438, K.466 Ligand excluded by PLIP IOD.24: 4 residues within 4Å: Chain A: K.523 Chain B: E.275, R.276, R.279 Ligand excluded by PLIP IOD.25: 2 residues within 4Å: Chain A: C.522 Chain B: N.64 Ligand excluded by PLIP IOD.26: 1 residues within 4Å: Chain B: R.540 Ligand excluded by PLIP IOD.27: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.28: 4 residues within 4Å: Chain B: K.335, A.336, F.361, R.364 Ligand excluded by PLIP IOD.29: 2 residues within 4Å: Chain B: Q.383, R.555 Ligand excluded by PLIP IOD.30: 1 residues within 4Å: Chain B: I.179 Ligand excluded by PLIP IOD.31: 1 residues within 4Å: Chain B: Q.163 Ligand excluded by PLIP IOD.32: 3 residues within 4Å: Chain B: K.119, F.121 Ligands: IOD.33 Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain B: R.56 Ligands: IOD.32 Ligand excluded by PLIP IOD.34: 1 residues within 4Å: Chain B: K.253 Ligand excluded by PLIP IOD.35: 3 residues within 4Å: Chain B: I.304, T.305, R.308 Ligand excluded by PLIP IOD.36: 3 residues within 4Å: Chain B: R.349, Q.354, K.368 Ligand excluded by PLIP IOD.37: 3 residues within 4Å: Chain B: K.63, R.268, E.275 Ligand excluded by PLIP IOD.38: 1 residues within 4Å: Chain B: K.550 Ligand excluded by PLIP IOD.39: 2 residues within 4Å: Chain B: V.472, K.503 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain B: I.435, L.438, K.466 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Structure and function of Hip, an attenuator of the Hsp70 chaperone cycle. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-07-03

Peptides

Heat shock 70 kDa protein 1A/1B, Hsc70-interacting protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Heat shock 70 kDa protein 1A/1B, Hsc70-interacting protein

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